Ss1.1-rplac_11044.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAGCCGCTGGACCTCAAGGGCCCGGCCGTGCCCCCGGAGCTGGACAAGCACTTCTTGC TGTGCGAGGCCTGCGGCAAGTGCAAGTGCAAGGAGTGCTCGTCGCCCCGGACGTTGCCCT CCTGCTGGGTCTGCAACCAGGAGTGCCTGTGCTCCGCGCAGACCCTGGTCAACTACGGCA CCTGCATGTGCCTCGTGCAGGGCGTCTTCTACCACTGCACCAACGAGGACGACGAGGGCT CCTGCGCCGACCACCCGTGCTCCTGCTCCCGCTCAAACTGCTGCGCCCGCTGGTCCTTCA TGGGCGCCCTCTCCCTGGTGCTGCCCTGCCTGCTCTGCTACCTGCCCGCCACCGGCTGCG TGAAGCTGGCCCAGCGCGGCTACGACCGCCTGCGCCGCCCCGGGTGCCGCTGCAAGCACA CGAACAGCGTCATCTGCAAGGCGGCCGCCGGGGACGCCAAGGCCAGCAGACCCGACAAGC CTTTCTGACACTCAGGGCCGAAGCCCCGGCGCTCCCCCTGGAAACCCGGTACCCTCGTGA CACCTGGGAAGACCCTCACAGCGGGGACCAGAGGCTCTCGCATCCTGGGGCGGACCGGCT GGTCTGCCCATCCCATCTCCCCACCCACCCACCAAGCTTCGGAAAAAACAGAGCAGCCGT CGCCCACCCCCGCTCTCCCTCCAAAGGCTGAAGAAGCGCTTTGCGGTGTTTTTCAGGGTC TGGGGACTTTGCGTGGAACGGACAGTGGCAGAGGCGTGGTATGGTTTGGGGGCGACTTTT CTTTTTCAGAAGATGGAGCACAGATGTGGACGCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAGCCGCTGGACCTCAAGGGCCCGGCCGTGCCCCCGGAGCTGGACAAGCACTTCTTGC TGTGCGAGGCCTGCGGCAAGTGCAAGTGCAAGGAGTGCTCGTCGCCCCGGACGTTGCCCT CCTGCTGGGTCTGCAACCAGGAGTGCCTGTGCTCCGCGCAGACCCTGGTCAACTACGGCA CCTGCATGTGCCTCGTGCAGGGCGTCTTCTACCACTGCACCAACGAGGACGACGAGGGCT CCTGCGCCGACCACCCGTGCTCCTGCTCCCGCTCAAACTGCTGCGCCCGCTGGTCCTTCA TGGGCGCCCTCTCCCTGGTGCTGCCCTGCCTGCTCTGCTACCTGCCCGCCACCGGCTGCG TGAAGCTGGCCCAGCGCGGCTACGACCGCCTGCGCCGCCCCGGGTGCCGCTGCAAGCACA CGAACAGCGTCATCTGCAAGGCGGCCGCCGGGGACGCCAAGGCCAGCAGACCCGACAAGC CTTTCTGACACTCAGGGCCGAAGCCCCGGCGCTCCCCCTGGAAACCCGGTACCCTCGTGA CACCTGGGAAGACCCTCACAGCGGGGACCAGAGGCTCTCGCATCCTGGGGCGGACCGGCT GGTCTGCCCATCCCATCTCCCCACCCACCCACCAAGCTTCGGAAAAAACAGAGCAGCCGT CGCCCACCCCCGCTCTCCCTCCAAAGGCTGAAGAAGCGCTTTGCGGTGTTTTTCAGGGTC TGGGGACTTTGCGTGGAACGGACAGTGGCAGAGGCGTGGTATGGTTTGGGGGCGACTTTT CTTTTTCAGAAGATGGAGCACAGATGTGGACGCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-159, + strand, RNAz p=0.584172 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, + strand, RNAz p=0.584172 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF227516, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-815, gnl|bosTau2|chr7 (36652992-36653794) | |
| 1-815, gnl|Hg17|chr5 (141674445-141673646) | |
| 1-815, gnl|Mm7|chr18 (38966494-38965744) | |
| 38-440, gnl|bosTau2|chr17 (19511406-19511808) | |
| 38-440, gnl|Hg17|chr4 (124680867-124681269) | |
| 38-440, gnl|Mm7|chr3 (37453888-37454290) | |
| 62-439, gnl|bosTau2|chr12 (31575141-31575515) | |
| 62-439, gnl|canFam2|chr22 (36316992-36317473) | |
| 62-439, gnl|danRer3|chr7 (23840761-23840258) | |
| 62-439, gnl|dasNov1|scaffold_7387 (36971-36490) | |
| 62-439, gnl|echTel1|scaffold_322955 (48465-48950) | |
| 62-439, gnl|fr1|chrUn (200776068-200775568) | |
| 62-439, gnl|galGal2|chr1 (145105200-145104719) | |
| 62-439, gnl|hg17|chr13 (79808916-79809397) | |
| 62-439, gnl|Hg17|chr13 (79809311-79808937) | |
| 62-439, gnl|loxAfr1|scaffold_3802 (30558-31039) | |
| 62-439, gnl|mm7|chr14 (100322511-100322992) | |
| 62-439, gnl|Mm7|chr14 (100322906-100322532) | |
| 62-439, gnl|monDom2|scaffold_8 (18787527-18788008) | |
| 62-439, gnl|oryCun1|scaffold_202349 (11862-11381) | |
| 62-439, gnl|panTro1|chr14 (62496302-62496783) | |
| 62-439, gnl|rheMac2|chr17 (60815804-60816285) | |
| 62-439, gnl|rn3|chr15 (90025563-90026044) | |
| 62-439, gnl|tetNig1|chr3 (4463150-4463641) | |
| 62-439, gnl|xenTro1|scaffold_141 (778449-777968) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-815, gnl|bosTau2|chr7 (36652992-36653794) | |
| 1-815, gnl|Hg17|chr5 (141674445-141673646) | |
| 1-815, gnl|Mm7|chr18 (38966494-38965744) | |
| 38-440, gnl|bosTau2|chr17 (19511406-19511808) | |
| 38-440, gnl|Hg17|chr4 (124680867-124681269) | |
| 38-440, gnl|Mm7|chr3 (37453888-37454290) | |
| 62-439, gnl|bosTau2|chr12 (31575141-31575515) | |
| 62-439, gnl|canFam2|chr22 (36316992-36317473) | |
| 62-439, gnl|danRer3|chr7 (23840761-23840258) | |
| 62-439, gnl|dasNov1|scaffold_7387 (36971-36490) | |
| 62-439, gnl|echTel1|scaffold_322955 (48465-48950) | |
| 62-439, gnl|fr1|chrUn (200776068-200775568) | |
| 62-439, gnl|galGal2|chr1 (145105200-145104719) | |
| 62-439, gnl|hg17|chr13 (79808916-79809397) | |
| 62-439, gnl|Hg17|chr13 (79809311-79808937) | |
| 62-439, gnl|loxAfr1|scaffold_3802 (30558-31039) | |
| 62-439, gnl|mm7|chr14 (100322511-100322992) | |
| 62-439, gnl|Mm7|chr14 (100322906-100322532) | |
| 62-439, gnl|monDom2|scaffold_8 (18787527-18788008) | |
| 62-439, gnl|oryCun1|scaffold_202349 (11862-11381) | |
| 62-439, gnl|panTro1|chr14 (62496302-62496783) | |
| 62-439, gnl|rheMac2|chr17 (60815804-60816285) | |
| 62-439, gnl|rn3|chr15 (90025563-90026044) | |
| 62-439, gnl|tetNig1|chr3 (4463150-4463641) | |
| 62-439, gnl|xenTro1|scaffold_141 (778449-777968) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| eru (0.120048) |