Non-Coding RNA Search

Ss1.1-rplac_11501.5

Sequence:


               
               AGGGCCAGTGCAGCACGGGAACTGGTCATCCAGCGGCTGGGTCTGGTGAGGAGTCTGTGT
GAGAGCGAGGAGCAGAGGTTGCTGGAACAGGTGCATGGCGAAGAGGAGCGGGCCCACCAG
AGCATCCTGACGCAGCGAGTACACTGGGCCGAGGCGCTGCAGAAGCTCGACACCATCCGG
ACCAGCCTGGTGGACATGCTCACCCATCTGGATGACCTCCAGCTAATTCAGAAGGAGCAG
GAGATTTTTGAGAGGACGGAGGAAGCAGAGGGCATTTGGCTTGTCTGCTGGTGAGTGGTG
TTAAACTTTAATGAGAAGTGTACTCGGAGCCCACTACTGTCCCAGCTCACTTGGGCAACT
CTGAGAGTTCTTTCCGCAGGCATGGAAGACGTGCGTATCGACCAGAGGACTGTCAGCCCC
TTCCTGCAACTGTCAGAGGACCGAAGGACCCTGACCTTCCATGCCAAGAAGTCCAAGGCC
TGGGCAGATGGCCCGGAGCGCTTTGACCACTGGCCCAATGCCCTGGCCACCACTTCCTTC
CAGGCTGGGCTGCACGCCTGGGTGGTGAACGTCCAGAACAGTGGTGCCTATAAGGTGGGC
GTGGCCTCAGGCCAGCTGCCCCGCAAGGGTTCCGGCAGCGACTCCCGTCTGGGCTACAAC
GCCTTCTCCTGGGTCTTCTCCCGCTACGACCAGGAGTTCCGTTTCTCACATGATGGGCAG
CACGAGCCCCTGGACCTGCTGCGGTGCCCATCTCAGCTGGGGGTGCTGCTGGACCTGCAG
GCCCAGGAGCTGCTCTTCTATGAGCCGGCCTCGGGCACAGTGCTACACACCCACCACGCG
TCCTTCCCCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCCAGTGCAGCACGGGAACTGGTCATCCAGCGGCTGGGTCTGGTGAGGAGTCTGTGT
GAGAGCGAGGAGCAGAGGTTGCTGGAACAGGTGCATGGCGAAGAGGAGCGGGCCCACCAG
AGCATCCTGACGCAGCGAGTACACTGGGCCGAGGCGCTGCAGAAGCTCGACACCATCCGG
ACCAGCCTGGTGGACATGCTCACCCATCTGGATGACCTCCAGCTAATTCAGAAGGAGCAG
GAGATTTTTGAGAGGACGGAGGAAGCAGAGGGCATTTGGCTTGTCTGCTGGTGAGTGGTG
TTAAACTTTAATGAGAAGTGTACTCGGAGCCCACTACTGTCCCAGCTCACTTGGGCAACT
CTGAGAGTTCTTTCCGCAGGCATGGAAGACGTGCGTATCGACCAGAGGACTGTCAGCCCC
TTCCTGCAACTGTCAGAGGACCGAAGGACCCTGACCTTCCATGCCAAGAAGTCCAAGGCC
TGGGCAGATGGCCCGGAGCGCTTTGACCACTGGCCCAATGCCCTGGCCACCACTTCCTTC
CAGGCTGGGCTGCACGCCTGGGTGGTGAACGTCCAGAACAGTGGTGCCTATAAGGTGGGC
GTGGCCTCAGGCCAGCTGCCCCGCAAGGGTTCCGGCAGCGACTCCCGTCTGGGCTACAAC
GCCTTCTCCTGGGTCTTCTCCCGCTACGACCAGGAGTTCCGTTTCTCACATGATGGGCAG
CACGAGCCCCTGGACCTGCTGCGGTGCCCATCTCAGCTGGGGGTGCTGCTGGACCTGCAG
GCCCAGGAGCTGCTCTTCTATGAGCCGGCCTCGGGCACAGTGCTACACACCCACCACGCG
TCCTTCCCCGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57094261|ref|XP_538804.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57094261|ref|XP_538804.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               111-228, - strand, RNAz p=0.823847
               

               
               547-706, + strand, RNAz p=0.641989

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-228, - strand, RNAz p=0.823847
               

               
               547-706, + strand, RNAz p=0.641989

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC001477, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC001477, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-228, gnl|bosTau2|chr8 (52867701-52867476)
               

               
               3-228, gnl|Hg17|chr9 (113202346-113202571)
               

               
               3-228, gnl|Mm7|chr4 (61920114-61920339)
               


               
               350-852, gnl|bosTau2|chr8 (52856759-52856256)
               

               
               350-852, gnl|Hg17|chr9 (113211419-113211922)
               

               
               350-852, gnl|Mm7|chr4 (61929662-61930166)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-228, gnl|bosTau2|chr8 (52867701-52867476)
               

               
               3-228, gnl|Hg17|chr9 (113202346-113202571)
               

               
               3-228, gnl|Mm7|chr4 (61920114-61920339)
               


               
               350-852, gnl|bosTau2|chr8 (52856759-52856256)
               

               
               350-852, gnl|Hg17|chr9 (113211419-113211922)
               

               
               350-852, gnl|Mm7|chr4 (61929662-61930166)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (0.239292)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	111-228, - strand, RNAz p=0.823847
	547-706, + strand, RNAz p=0.641989

	3-228, gnl\|bosTau2\|chr8 (52867701-52867476)
	3-228, gnl\|Hg17\|chr9 (113202346-113202571)
	3-228, gnl\|Mm7\|chr4 (61920114-61920339)

	350-852, gnl\|bosTau2\|chr8 (52856759-52856256)
	350-852, gnl\|Hg17\|chr9 (113211419-113211922)
	350-852, gnl\|Mm7\|chr4 (61929662-61930166)