Non-Coding RNA Search

Ss1.1-rplac_11625.5

Sequence:


               
               TGAGGGATAAAAGAAGCATAGCATCTTCAACTTTTTCACCATGTTCATTATAGCGTACAT
ACGATACAGGCTGTATGAAGAATCTTACTTCAGTAGTTGGAGTAGTAATCGTTACCGTTT
TTGTGCGTTCACTCCATTCCAGTTACTATTCATTCACCTTCCAGGTGGATATTCTTACAG
CTTAGGAAAGGGAAGCTCAGACAGGTTATTGCTAAAGACCTACGGTAGGCAGCAGAGCTG
GGCTTCAAACTCAAGCGTGAGCCTAAAGCCTCTACTCTGTCTACTGAACTTTGCCGCTGC
AAAGAATGGGTCATTCCGTTCCACGCTGATTCTTTTTGGTGCTGAAGGGAGGCAATGATA
CAACATTAAAAGAGGTCTGCAAGATGCTCATCCACATGCGTCACCCAGAGGTGTACCACC
ACTTGGGTGTCATACCCCCACGCGGAGTTCTTCTTCACGGGCCGCCGGGCTGCGGGAAGA
CGTTACTTGCACATGCAATTGCTGGGGAACTTGACCTTCCAATTCTAAAAGTAGCTGCTA
CAGAGATTGTATCTGGAGTATCTGGAGAATCTGAACAGAAGTTGAGAGAACTGTTTGAAC
AAGCCGTGTCAAATGCACCATGTATCCTTTTTATTGATGAAATTGATGCTATTACCCCCA
AAAGAGAAGTTGCTTCAAAAGATATGGAGCGAAGAATTGTAGCCCAGCTCCTAACCTGCA
TGGACGATTTGAATAACATGGCTGCTACGGCTCGGGTCCTAGTCATTGGAGCTACTAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGGATAAAAGAAGCATAGCATCTTCAACTTTTTCACCATGTTCATTATAGCGTACAT
ACGATACAGGCTGTATGAAGAATCTTACTTCAGTAGTTGGAGTAGTAATCGTTACCGTTT
TTGTGCGTTCACTCCATTCCAGTTACTATTCATTCACCTTCCAGGTGGATATTCTTACAG
CTTAGGAAAGGGAAGCTCAGACAGGTTATTGCTAAAGACCTACGGTAGGCAGCAGAGCTG
GGCTTCAAACTCAAGCGTGAGCCTAAAGCCTCTACTCTGTCTACTGAACTTTGCCGCTGC
AAAGAATGGGTCATTCCGTTCCACGCTGATTCTTTTTGGTGCTGAAGGGAGGCAATGATA
CAACATTAAAAGAGGTCTGCAAGATGCTCATCCACATGCGTCACCCAGAGGTGTACCACC
ACTTGGGTGTCATACCCCCACGCGGAGTTCTTCTTCACGGGCCGCCGGGCTGCGGGAAGA
CGTTACTTGCACATGCAATTGCTGGGGAACTTGACCTTCCAATTCTAAAAGTAGCTGCTA
CAGAGATTGTATCTGGAGTATCTGGAGAATCTGAACAGAAGTTGAGAGAACTGTTTGAAC
AAGCCGTGTCAAATGCACCATGTATCCTTTTTATTGATGAAATTGATGCTATTACCCCCA
AAAGAGAAGTTGCTTCAAAAGATATGGAGCGAAGAATTGTAGCCCAGCTCCTAACCTGCA
TGGACGATTTGAATAACATGGCTGCTACGGCTCGGGTCCTAGTCATTGGAGCTACTAACC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-507, gnl|bosTau2|chr16 (16326087-16326597)
               

               
               1-507, gnl|Hg17|chr1 (220799018-220798159)
               

               
               1-507, gnl|Mm7|chr1 (181109664-181109157)
               


               
               608-726, gnl|bosTau2|chr16 (16330273-16330391)
               

               
               608-726, gnl|Hg17|chr1 (220791056-220790938)
               

               
               608-726, gnl|Mm7|chr1 (181103634-181103516)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-507, gnl|bosTau2|chr16 (16326087-16326597)
               

               
               1-507, gnl|Hg17|chr1 (220799018-220798159)
               

               
               1-507, gnl|Mm7|chr1 (181109664-181109157)
               


               
               608-726, gnl|bosTau2|chr16 (16330273-16330391)
               

               
               608-726, gnl|Hg17|chr1 (220791056-220790938)
               

               
               608-726, gnl|Mm7|chr1 (181103634-181103516)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ese (0.126502)

	1-507, gnl\|bosTau2\|chr16 (16326087-16326597)
	1-507, gnl\|Hg17\|chr1 (220799018-220798159)
	1-507, gnl\|Mm7\|chr1 (181109664-181109157)

	608-726, gnl\|bosTau2\|chr16 (16330273-16330391)
	608-726, gnl\|Hg17\|chr1 (220791056-220790938)
	608-726, gnl\|Mm7\|chr1 (181103634-181103516)