Ss1.1-rplac_12310.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCCTGGAAGACCTGGAGTCGGCCCTGGCAGAACACGCCCCTGCGCCACAGGAGGTTAA CTCAGAGCTGCCGCCTCTCACCATAGATGGAATTCCAGTCTCTGTGGACAAAATGACCCA GGCCCAGCTTCGGGCATTTATTCCAGAGATGCTGAAATACTCCACAGGTCGAGGAAAACC AGGCTGGGGTAAAGAAAGCTGCAAGCCCATCTGGTGGCCTGAAGATATCCCATGGGCAAA TGTTCGGAGCGATGTCCGCACAGAAGAGCAAAAGCAAAGGGTTTCATGGACCCAGGCACT ACGGACCATAGTTAAAAACTGTTATAAACAGCATGGGCGGGAGGACCTTTTGTATGCTTT TGAAGATCAGCAAACACAAACACAAGCCACAACCACACATAGTATAGCCCATCTTGTACC ATCACAGACTGTAGTCCAGACCTTTAGTAACCCCGATGGCACTGTCTCTCTTATCCAGGT TGGTACAGGGGCAACAGTAGCCACATTGGCCGATGCTTCAGAATTGCCAACTACAGTCAC TGTTGCCCAGGTGAATTATTCTGCTGTGGCTGATGGAGAGGTGGAGCAAAACTGGGCCAC ATTACAGGGAGGTGAGATGACCATCCAGACAACGCAAGCGTCAGAGGCCACCCAGGCGGT GGCATCATTGGCAGAGGCCGCAGTGGCAGCTTCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCCTGGAAGACCTGGAGTCGGCCCTGGCAGAACACGCCCCTGCGCCACAGGAGGTTAA CTCAGAGCTGCCGCCTCTCACCATAGATGGAATTCCAGTCTCTGTGGACAAAATGACCCA GGCCCAGCTTCGGGCATTTATTCCAGAGATGCTGAAATACTCCACAGGTCGAGGAAAACC AGGCTGGGGTAAAGAAAGCTGCAAGCCCATCTGGTGGCCTGAAGATATCCCATGGGCAAA TGTTCGGAGCGATGTCCGCACAGAAGAGCAAAAGCAAAGGGTTTCATGGACCCAGGCACT ACGGACCATAGTTAAAAACTGTTATAAACAGCATGGGCGGGAGGACCTTTTGTATGCTTT TGAAGATCAGCAAACACAAACACAAGCCACAACCACACATAGTATAGCCCATCTTGTACC ATCACAGACTGTAGTCCAGACCTTTAGTAACCCCGATGGCACTGTCTCTCTTATCCAGGT TGGTACAGGGGCAACAGTAGCCACATTGGCCGATGCTTCAGAATTGCCAACTACAGTCAC TGTTGCCCAGGTGAATTATTCTGCTGTGGCTGATGGAGAGGTGGAGCAAAACTGGGCCAC ATTACAGGGAGGTGAGATGACCATCCAGACAACGCAAGCGTCAGAGGCCACCCAGGCGGT GGCATCATTGGCAGAGGCCGCAGTGGCAGCTTCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 359-478, - strand, RNAz p=0.555051 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 359-478, - strand, RNAz p=0.555051 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr4 (49366864-49366743) | |
| 1-122, gnl|canFam2|chr14 (10101843-10101687) | |
| 1-122, gnl|danRer3|chr4 (16953765-16953916) | |
| 1-122, gnl|fr1|chrUn (180840440-180840285) | |
| 1-122, gnl|galGal2|chr14 (14706790-14706949) | |
| 1-122, gnl|hg17|chr7 (128924188-128924344) | |
| 1-122, gnl|Hg17|chr7 (128924217-128924337) | |
| 1-122, gnl|loxAfr1|scaffold_208855 (822-666) | |
| 1-122, gnl|mm7|chr6 (30034306-30034462) | |
| 1-122, gnl|Mm7|chr6 (30034335-30034455) | |
| 1-122, gnl|monDom2|scaffold_22 (14876606-14876450) | |
| 1-122, gnl|oryCun1|scaffold_213672 (57692-57536) | |
| 1-122, gnl|panTro1|chr6 (131324774-131324930) | |
| 1-122, gnl|rheMac2|chr3 (167053441-167053597) | |
| 1-122, gnl|rn3|chr4 (57284079-57284235) | |
| 1-122, gnl|tetNig1|chr19 (2968098-2968252) | |
| 1-122, gnl|xenTro1|scaffold_20 (2905256-2905099) | |
| 280-485, gnl|bosTau2|chr4 (49352470-49352265) | |
| 280-485, gnl|Hg17|chr7 (128944164-128944369) | |
| 280-485, gnl|Mm7|chr6 (30048241-30048446) | |
| 579-696, gnl|bosTau2|chr4 (49344588-49344471) | |
| 579-696, gnl|canFam2|chr14 (10077738-10077544) | |
| 579-696, gnl|danRer3|chr4 (16959704-16959894) | |
| 579-696, gnl|dasNov1|scaffold_84845 (3302-3496) | |
| 579-696, gnl|fr1|chrUn (180837832-180837645) | |
| 579-696, gnl|galGal2|chr14 (14714519-14714704) | |
| 579-696, gnl|hg17|chr7 (128950978-128951172) | |
| 579-696, gnl|Hg17|chr7 (128951008-128951125) | |
| 579-696, gnl|loxAfr1|scaffold_21746 (17897-17703) | |
| 579-696, gnl|mm7|chr6 (30051065-30051257) | |
| 579-696, gnl|Mm7|chr6 (30051093-30051210) | |
| 579-696, gnl|monDom2|scaffold_22 (14842986-14842792) | |
| 579-696, gnl|oryCun1|scaffold_175859 (50145-50344) | |
| 579-696, gnl|panTro1|chr6 (131351597-131351792) | |
| 579-696, gnl|rn3|chr4 (57300189-57300381) | |
| 579-696, gnl|tetNig1|chr19 (2970716-2970876) | |
| 579-696, gnl|xenTro1|scaffold_20 (2901793-2901626) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr4 (49366864-49366743) | |
| 1-122, gnl|canFam2|chr14 (10101843-10101687) | |
| 1-122, gnl|danRer3|chr4 (16953765-16953916) | |
| 1-122, gnl|fr1|chrUn (180840440-180840285) | |
| 1-122, gnl|galGal2|chr14 (14706790-14706949) | |
| 1-122, gnl|hg17|chr7 (128924188-128924344) | |
| 1-122, gnl|Hg17|chr7 (128924217-128924337) | |
| 1-122, gnl|loxAfr1|scaffold_208855 (822-666) | |
| 1-122, gnl|mm7|chr6 (30034306-30034462) | |
| 1-122, gnl|Mm7|chr6 (30034335-30034455) | |
| 1-122, gnl|monDom2|scaffold_22 (14876606-14876450) | |
| 1-122, gnl|oryCun1|scaffold_213672 (57692-57536) | |
| 1-122, gnl|panTro1|chr6 (131324774-131324930) | |
| 1-122, gnl|rheMac2|chr3 (167053441-167053597) | |
| 1-122, gnl|rn3|chr4 (57284079-57284235) | |
| 1-122, gnl|tetNig1|chr19 (2968098-2968252) | |
| 1-122, gnl|xenTro1|scaffold_20 (2905256-2905099) | |
| 280-485, gnl|bosTau2|chr4 (49352470-49352265) | |
| 280-485, gnl|Hg17|chr7 (128944164-128944369) | |
| 280-485, gnl|Mm7|chr6 (30048241-30048446) | |
| 579-696, gnl|bosTau2|chr4 (49344588-49344471) | |
| 579-696, gnl|canFam2|chr14 (10077738-10077544) | |
| 579-696, gnl|danRer3|chr4 (16959704-16959894) | |
| 579-696, gnl|dasNov1|scaffold_84845 (3302-3496) | |
| 579-696, gnl|fr1|chrUn (180837832-180837645) | |
| 579-696, gnl|galGal2|chr14 (14714519-14714704) | |
| 579-696, gnl|hg17|chr7 (128950978-128951172) | |
| 579-696, gnl|Hg17|chr7 (128951008-128951125) | |
| 579-696, gnl|loxAfr1|scaffold_21746 (17897-17703) | |
| 579-696, gnl|mm7|chr6 (30051065-30051257) | |
| 579-696, gnl|Mm7|chr6 (30051093-30051210) | |
| 579-696, gnl|monDom2|scaffold_22 (14842986-14842792) | |
| 579-696, gnl|oryCun1|scaffold_175859 (50145-50344) | |
| 579-696, gnl|panTro1|chr6 (131351597-131351792) | |
| 579-696, gnl|rn3|chr4 (57300189-57300381) | |
| 579-696, gnl|tetNig1|chr19 (2970716-2970876) | |
| 579-696, gnl|xenTro1|scaffold_20 (2901793-2901626) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |