Non-Coding RNA Search

Ss1.1-rplac_12404.5

Sequence:


               
               GAGGCCCGCCGGCGCCAGGAGCAGCAGCAGCAGCAGCAACGACAGGAGCAGCAGCAGCAG
CAACAACAACAGGCTGCTGCTGTAGCTGCTGCCGCCGCCCCCCAGGCCCGGAGCTCCCAG
CCCCAGTCCATGTTGGACCAGCAGAGGGAGTTGGCCCGAAAGCAGGAGCAGGAGCGAAGG
CGCCGGGAAGCGATGGCAGCTACCATTGACATGAATTTCCAGAGTGATCTATTGTCAATA
TTTGAAGAAAATCTTTTCTGAGAGCACCTAGGTGATTTCTGACTTTGATTTTCTGGCAAA
ACGTTGACTCTCCATAGTGTTAGGGGCAGTGGTGGAGGCAGTAGCAGCGGCAAGGGGGTG
TCTCCTGGCCTGGCCCTCCTGCATGCTACGCCTGGGGCAGGCCTGATAGGCAGCTGAGGA
TCGCAGAGCCTGTCTGCCTTACAGCCAGCCGGACGTCCCGCTACCCGCCACCCGCCACAG
GACGTCGGCTCAGAGCACACCTCACTATGGGCAAGTGCCGGCCAGACCCAAGCCTGAGTC
CCCGCGTGTGGGGCAGAGGCCCTTCTCTCCGCCAAATGTCTACACAGTATACACAGGACA
TCGTTGCTGCCACCACCGTGACTGGTTGACTGTCCCCAAGAACGTGACGTTTGTGACGTC
CTGCCTGCCAGGAGTCCTTCCCCACACCCCAGCTGCTCCTGCCCACACCCAGGAGACCAG
GGCAGGCCTGCAAGAGCTGGAAGTGGTGAGGGCTCTGGCCTACCCCCTTGCTGGCACTGA
CTTTGCCTTGAACAGACCCCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCCGCCGGCGCCAGGAGCAGCAGCAGCAGCAGCAACGACAGGAGCAGCAGCAGCAG
CAACAACAACAGGCTGCTGCTGTAGCTGCTGCCGCCGCCCCCCAGGCCCGGAGCTCCCAG
CCCCAGTCCATGTTGGACCAGCAGAGGGAGTTGGCCCGAAAGCAGGAGCAGGAGCGAAGG
CGCCGGGAAGCGATGGCAGCTACCATTGACATGAATTTCCAGAGTGATCTATTGTCAATA
TTTGAAGAAAATCTTTTCTGAGAGCACCTAGGTGATTTCTGACTTTGATTTTCTGGCAAA
ACGTTGACTCTCCATAGTGTTAGGGGCAGTGGTGGAGGCAGTAGCAGCGGCAAGGGGGTG
TCTCCTGGCCTGGCCCTCCTGCATGCTACGCCTGGGGCAGGCCTGATAGGCAGCTGAGGA
TCGCAGAGCCTGTCTGCCTTACAGCCAGCCGGACGTCCCGCTACCCGCCACCCGCCACAG
GACGTCGGCTCAGAGCACACCTCACTATGGGCAAGTGCCGGCCAGACCCAAGCCTGAGTC
CCCGCGTGTGGGGCAGAGGCCCTTCTCTCCGCCAAATGTCTACACAGTATACACAGGACA
TCGTTGCTGCCACCACCGTGACTGGTTGACTGTCCCCAAGAACGTGACGTTTGTGACGTC
CTGCCTGCCAGGAGTCCTTCCCCACACCCCAGCTGCTCCTGCCCACACCCAGGAGACCAG
GGCAGGCCTGCAAGAGCTGGAAGTGGTGAGGGCTCTGGCCTACCCCCTTGCTGGCACTGA
CTTTGCCTTGAACAGACCCCACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q16861_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q16861_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-195, - strand, RNAz p=0.995886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-195, - strand, RNAz p=0.995886

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               52-195, 4121187 BARC 8BOV Bos taurus cDNA clone 8BOV_34I03 5', mRNA 
(gb|CN787108.1|), blast E-value=0, identity=93.75% 
               

               
               52-195, BovGen_15271 normal cattle brain Bos taurus cDNA clone (gb|CO886946.1|), 
blast E-value=0, identity=93.75% 
               

               
               52-195, LB0026.CR_K24 GC_BGC-02 Bos taurus cDNA clone IMAGE (gb|DT818666.1|), 
blast E-value=0, identity=93.75% 
               

               
               52-195, 000807BMVB003445HT BMVB Bos taurus cDNA, mRNA sequence (gb|DY124705.1|), 
blast E-value=0, identity=93.06% 
               

               
               52-195, 000212BCEB005117HT BCEB Bos taurus cDNA, mRNA sequence (gb|DY174723.1|), 
blast E-value=0, identity=93.75% 
               

               
               52-195, sh2P0012A04_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, 
(gb|DY494186.1|), blast E-value=0, identity=93.75%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               52-195, 4121187 BARC 8BOV Bos taurus cDNA clone 8BOV_34I03 5', mRNA 
(gb|CN787108.1|), blast E-value=0, identity=93.75% 
               

               
               52-195, BovGen_15271 normal cattle brain Bos taurus cDNA clone (gb|CO886946.1|), 
blast E-value=0, identity=93.75% 
               

               
               52-195, LB0026.CR_K24 GC_BGC-02 Bos taurus cDNA clone IMAGE (gb|DT818666.1|), 
blast E-value=0, identity=93.75% 
               

               
               52-195, 000807BMVB003445HT BMVB Bos taurus cDNA, mRNA sequence (gb|DY124705.1|), 
blast E-value=0, identity=93.06% 
               

               
               52-195, 000212BCEB005117HT BCEB Bos taurus cDNA, mRNA sequence (gb|DY174723.1|), 
blast E-value=0, identity=93.75% 
               

               
               52-195, sh2P0012A04_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, 
(gb|DY494186.1|), blast E-value=0, identity=93.75%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-195, gnl|bosTau2|chr7 (7059759-7059947)
               

               
               1-195, gnl|Hg17|chr19 (15210742-15210551)
               

               
               1-195, gnl|Mm7|chr17 (30390170-30389973)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-195, gnl|bosTau2|chr7 (7059759-7059947)
               

               
               1-195, gnl|Hg17|chr19 (15210742-15210551)
               

               
               1-195, gnl|Mm7|chr17 (30390170-30389973)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pla (0.133672)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	52-195, 4121187 BARC 8BOV Bos taurus cDNA clone 8BOV_34I03 5', mRNA (gb\|CN787108.1\|), blast E-value=0, identity=93.75%
	52-195, BovGen_15271 normal cattle brain Bos taurus cDNA clone (gb\|CO886946.1\|), blast E-value=0, identity=93.75%
	52-195, LB0026.CR_K24 GC_BGC-02 Bos taurus cDNA clone IMAGE (gb\|DT818666.1\|), blast E-value=0, identity=93.75%
	52-195, 000807BMVB003445HT BMVB Bos taurus cDNA, mRNA sequence (gb\|DY124705.1\|), blast E-value=0, identity=93.06%
	52-195, 000212BCEB005117HT BCEB Bos taurus cDNA, mRNA sequence (gb\|DY174723.1\|), blast E-value=0, identity=93.75%
	52-195, sh2P0012A04_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb\|DY494186.1\|), blast E-value=0, identity=93.75%

	1-195, gnl\|bosTau2\|chr7 (7059759-7059947)
	1-195, gnl\|Hg17\|chr19 (15210742-15210551)
	1-195, gnl\|Mm7\|chr17 (30390170-30389973)

	pla (0.133672)
	cov (0.132153)
	thg (0.126791)
	cty (0.10408)
	eje (0.0988338)