Non-Coding RNA Search

Ss1.1-rplac_12495.5

Sequence:


               
               CTTTGTAGCCTAAGTTGCATGTAACAGACTTTAACTGCTCTGAGGAGTTGTGCAAACTTT
TCATTCCATGACAGTCTTTTTGCATTGAATTTCAAACAAATGGCTCTGAGTTATGTCATT
CCCTACATGGCACTTTAAAGAAAGAAAAGACATGCTTCTCATTCTAAAATCCGTATTGTA
GTTTAGCACTCCCATTCGTATTTTTGCATATTTTAATTAAAAATACTTTTAAGGAAAAAG
CAATTTCACTATAAAAATGTGGTGGCCTGGTACCATGTGGTGTTGCCTCCTCCAAGCACT
GTAAGTTAAACTCTACATAGATTAAATTGGACAAGAGAAACATGTTCAGTGTGTGGAATG
AAAATACATTTATATATTTTTGGTCAAGCTCGCTCATGTTTGTCTAGAACCAAGATAGGG
TATGTACAGTTTGCAGTGCAGTGGGCACAGTACTAACATCTTAGAGGTAACAGTGATTGC
ATTCATTCCAGAGTCAGTTTTGTATGTGGCTACAACAAATTTTACTAGTTCTTTCATTCT
TTCCATGCACTGAATTTGAGAAAATGATTTTCCCTTTGCAGGTTGCACACGATTTTGTTT
ATGCATTTCCTTAAAATTGTAGAATCCAGGACACAAACCATAGTAGGCAATACAATTTTA
GAATGTAATATATAGAGGTGCATTTAGCCTCTTTTAGAAATCAGTGGATTGAATGTCGTC
TTTTTTTTAATTTTACATTCCTCAAGGTGCCTCGTTTTTCTTGACTTCGTCCATTAACAT
TTATCCATATGCCTCTGCAATAACTAGATTGTGAAAAAAGATAACAAATGTAACAATAAT
CCATTGTTTGAGGTGCTTGCAGTTGTCTTAAAAATTAAAGTGTTTTGGTTTTTTTTTTCC
AGACATTGCCTTGGTCATTGGCCTGTATTTGAAGCGATAGAATCAAACAAACATTTCCTC
TCCTTTTAATGTAGTGTAACCAAAACATAAAGGAAATACCAACATTCTTGTTGTAGGAAA
TACAGTTGTAGAACATGCATTAAGGCTTAATACGAAGAAATCATTCATTGTTTCGTAAGG
GTAGGGCATGGATTTAGAAAAGATGCTGTAGAAGTTTGCACCATGGTGCAGTGGGTTAAG
AATCCGACTGCAGCAGGTAGGGTCACCAGGGAGGCTCATGTTTGATCCCCGGCCCAGCAC
AGTGGGTTAAAGGATCTGGCATTCCTGCAGTTTGGACATAGGTCACAGCTGTGGCTCGGT
TTCAGGCCTTGGACCAGGAACTTGCACATGCCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTAGCCTAAGTTGCATGTAACAGACTTTAACTGCTCTGAGGAGTTGTGCAAACTTT
TCATTCCATGACAGTCTTTTTGCATTGAATTTCAAACAAATGGCTCTGAGTTATGTCATT
CCCTACATGGCACTTTAAAGAAAGAAAAGACATGCTTCTCATTCTAAAATCCGTATTGTA
GTTTAGCACTCCCATTCGTATTTTTGCATATTTTAATTAAAAATACTTTTAAGGAAAAAG
CAATTTCACTATAAAAATGTGGTGGCCTGGTACCATGTGGTGTTGCCTCCTCCAAGCACT
GTAAGTTAAACTCTACATAGATTAAATTGGACAAGAGAAACATGTTCAGTGTGTGGAATG
AAAATACATTTATATATTTTTGGTCAAGCTCGCTCATGTTTGTCTAGAACCAAGATAGGG
TATGTACAGTTTGCAGTGCAGTGGGCACAGTACTAACATCTTAGAGGTAACAGTGATTGC
ATTCATTCCAGAGTCAGTTTTGTATGTGGCTACAACAAATTTTACTAGTTCTTTCATTCT
TTCCATGCACTGAATTTGAGAAAATGATTTTCCCTTTGCAGGTTGCACACGATTTTGTTT
ATGCATTTCCTTAAAATTGTAGAATCCAGGACACAAACCATAGTAGGCAATACAATTTTA
GAATGTAATATATAGAGGTGCATTTAGCCTCTTTTAGAAATCAGTGGATTGAATGTCGTC
TTTTTTTTAATTTTACATTCCTCAAGGTGCCTCGTTTTTCTTGACTTCGTCCATTAACAT
TTATCCATATGCCTCTGCAATAACTAGATTGTGAAAAAAGATAACAAATGTAACAATAAT
CCATTGTTTGAGGTGCTTGCAGTTGTCTTAAAAATTAAAGTGTTTTGGTTTTTTTTTTCC
AGACATTGCCTTGGTCATTGGCCTGTATTTGAAGCGATAGAATCAAACAAACATTTCCTC
TCCTTTTAATGTAGTGTAACCAAAACATAAAGGAAATACCAACATTCTTGTTGTAGGAAA
TACAGTTGTAGAACATGCATTAAGGCTTAATACGAAGAAATCATTCATTGTTTCGTAAGG
GTAGGGCATGGATTTAGAAAAGATGCTGTAGAAGTTTGCACCATGGTGCAGTGGGTTAAG
AATCCGACTGCAGCAGGTAGGGTCACCAGGGAGGCTCATGTTTGATCCCCGGCCCAGCAC
AGTGGGTTAAAGGATCTGGCATTCCTGCAGTTTGGACATAGGTCACAGCTGTGGCTCGGT
TTCAGGCCTTGGACCAGGAACTTGCACATGCCACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               657-776, + strand, RNAz p=0.753213

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               657-776, + strand, RNAz p=0.753213

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_182692, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_182692, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1110, gnl|bosTau2|chr4 (22273989-22272884)
               

               
               1-1110, gnl|Hg17|chr7 (104351678-104350584)
               

               
               1-1110, gnl|Mm7|chr5 (22547479-22546492)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1110, gnl|bosTau2|chr4 (22273989-22272884)
               

               
               1-1110, gnl|Hg17|chr7 (104351678-104350584)
               

               
               1-1110, gnl|Mm7|chr5 (22547479-22546492)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               pro (0.512033)
               

               
               tra (0.369276)
               

               
               cte (0.29274)
               

               
               pan (0.23596)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               tra (0.369276)
               

               
               cte (0.29274)
               

               
               pan (0.23596)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)

	1-1110, gnl\|bosTau2\|chr4 (22273989-22272884)
	1-1110, gnl\|Hg17\|chr7 (104351678-104350584)
	1-1110, gnl\|Mm7\|chr5 (22547479-22546492)

	pro (0.512033)
	tra (0.369276)
	cte (0.29274)
	pan (0.23596)
	fbs (0.175346)
	fhi (0.169578)
	lin (0.145603)
	pla (0.133672)
	cbr (0.127975)
	sug (0.127291)