Ss1.1-rplac_13106.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGAAACTTCTTCGAGAGGACTCCTGTAATGCTGGGCCTGAGGACATCCAGTCTCGGA TAGGACACTGCATGCTGTTCCACTCAAAAAATCGTTGCTTATATGTATTTGGTGGCCAGA GATCGAAGACCTATTTGAATGATTTCTTTAGTTATGATGTGGACTCTGATCATGTAGACA TAATATCAGATGGTACCAAGAAAGACTCTGGAATGGTTCCAATGACAGGATTCACACAGA GAGCAACCATTGATCCAGAACTGAATGAAATACATGTCTTATCTGGACTCAGCAAAGACA AGGAAAAGAGGGAAGAGAATGTCAGAAATTCATTCTGGATTTATGACATTGTAAGGAATA GTTGGTCTTGTGTCTATAAGAATGATCAGGCTGCAAAGGATAATCCAAGTAAAAGTCTTC AGGAGGAAGAACCATGTCCACGATTTGCCCATCAGCTTGTATATGATGAATTACACAAGG TTCATTATTTATTTGGTGGGAATCCAGGAAAATCTTGCTCCCCAAAGATGAGATTAGATG ACTTCTGGTCACTGAAATTGTGTAGGCCTTCAAAAGATTACTTACTGAGACATTGCAAGT ACCTCATAAGGAAACACAGGTTTGAAGAAAAGGCCCAAATGGATCCCCTTAGTGCTCTGA AATATTTACAAAATGATCTTTATATAACTGTGGATCATTCAGACCCAGAAGAGACGAAAG AGTTTCAGCTCCTAGCTTCAGCTCTATTTAAATCTGGTTCAGATTTCACAGCTCTAGGCT TTTCGGATGTGGATCACACCTATGCTCAAAGAACTCAGCTCTTTGATACCTTAGTAAATT TCTTTCCTGACAGCATGACTCCTCCTAAAGGCAACCTGGTGGACCTCATCACACTGTGAC TGAAGAATCCCTGGATAGAAATGGAGCACAGGAGTCTGCTTTCAGTATTTTGGATTTCAA CTCTGTTGGCTGACAGTTAGGCTGCAGTGACCGAGGACTGCACCAGAATTTTGAAGGGAT CTTTGCTGTCACAAGTTTTAACCCTGTTCTGTCATACCTAACCTCAACCCTATAGTCCTC ATCCCATTCCTAAATTAGACTAATAAAGTGAAATTGATATACTTTCCATTTAAATACATA TATTTTTTCTTACTTTTAAGAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGAAACTTCTTCGAGAGGACTCCTGTAATGCTGGGCCTGAGGACATCCAGTCTCGGA TAGGACACTGCATGCTGTTCCACTCAAAAAATCGTTGCTTATATGTATTTGGTGGCCAGA GATCGAAGACCTATTTGAATGATTTCTTTAGTTATGATGTGGACTCTGATCATGTAGACA TAATATCAGATGGTACCAAGAAAGACTCTGGAATGGTTCCAATGACAGGATTCACACAGA GAGCAACCATTGATCCAGAACTGAATGAAATACATGTCTTATCTGGACTCAGCAAAGACA AGGAAAAGAGGGAAGAGAATGTCAGAAATTCATTCTGGATTTATGACATTGTAAGGAATA GTTGGTCTTGTGTCTATAAGAATGATCAGGCTGCAAAGGATAATCCAAGTAAAAGTCTTC AGGAGGAAGAACCATGTCCACGATTTGCCCATCAGCTTGTATATGATGAATTACACAAGG TTCATTATTTATTTGGTGGGAATCCAGGAAAATCTTGCTCCCCAAAGATGAGATTAGATG ACTTCTGGTCACTGAAATTGTGTAGGCCTTCAAAAGATTACTTACTGAGACATTGCAAGT ACCTCATAAGGAAACACAGGTTTGAAGAAAAGGCCCAAATGGATCCCCTTAGTGCTCTGA AATATTTACAAAATGATCTTTATATAACTGTGGATCATTCAGACCCAGAAGAGACGAAAG AGTTTCAGCTCCTAGCTTCAGCTCTATTTAAATCTGGTTCAGATTTCACAGCTCTAGGCT TTTCGGATGTGGATCACACCTATGCTCAAAGAACTCAGCTCTTTGATACCTTAGTAAATT TCTTTCCTGACAGCATGACTCCTCCTAAAGGCAACCTGGTGGACCTCATCACACTGTGAC TGAAGAATCCCTGGATAGAAATGGAGCACAGGAGTCTGCTTTCAGTATTTTGGATTTCAA CTCTGTTGGCTGACAGTTAGGCTGCAGTGACCGAGGACTGCACCAGAATTTTGAAGGGAT CTTTGCTGTCACAAGTTTTAACCCTGTTCTGTCATACCTAACCTCAACCCTATAGTCCTC ATCCCATTCCTAAATTAGACTAATAAAGTGAAATTGATATACTTTCCATTTAAATACATA TATTTTTTCTTACTTTTAAGAATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 618-722, gnl|bosTau2|chr4 (52235204-52235100) | |
| 618-722, gnl|canFam2|chr14 (8605798-8605669) | |
| 618-722, gnl|danRer3|chr4 (7582829-7582695) | |
| 618-722, gnl|dasNov1|scaffold_25694 (16974-17100) | |
| 618-722, gnl|echTel1|scaffold_121295 (86-215) | |
| 618-722, gnl|fr1|chrUn (280083582-280083462) | |
| 618-722, gnl|galGal2|chr1 (482237-482373) | |
| 618-722, gnl|hg17|chr7 (130612850-130612983) | |
| 618-722, gnl|Hg17|chr7 (130612854-130612958) | |
| 618-722, gnl|loxAfr1|scaffold_8180 (57442-57571) | |
| 618-722, gnl|mm7|chr6 (31426962-31427093) | |
| 618-722, gnl|Mm7|chr6 (31426966-31427070) | |
| 618-722, gnl|monDom2|scaffold_22 (13165095-13164971) | |
| 618-722, gnl|oryCun1|scaffold_162197 (7118-7252) | |
| 618-722, gnl|panTro1|chr6 (133200350-133200483) | |
| 618-722, gnl|rheMac2|chr3 (168850954-168851087) | |
| 618-722, gnl|rn3|chr4 (58861272-58861403) | |
| 618-722, gnl|tetNig1|chrUn_random (115981916-115981798) | |
| 618-722, gnl|xenTro1|scaffold_20 (835134-835250) | |
| 776-1164, gnl|bosTau2|chr4 (52219405-52219016) | |
| 776-1164, gnl|Hg17|chr7 (130629619-130630023) | |
| 776-1164, gnl|Mm7|chr6 (31437922-31438301) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 618-722, gnl|bosTau2|chr4 (52235204-52235100) | |
| 618-722, gnl|canFam2|chr14 (8605798-8605669) | |
| 618-722, gnl|danRer3|chr4 (7582829-7582695) | |
| 618-722, gnl|dasNov1|scaffold_25694 (16974-17100) | |
| 618-722, gnl|echTel1|scaffold_121295 (86-215) | |
| 618-722, gnl|fr1|chrUn (280083582-280083462) | |
| 618-722, gnl|galGal2|chr1 (482237-482373) | |
| 618-722, gnl|hg17|chr7 (130612850-130612983) | |
| 618-722, gnl|Hg17|chr7 (130612854-130612958) | |
| 618-722, gnl|loxAfr1|scaffold_8180 (57442-57571) | |
| 618-722, gnl|mm7|chr6 (31426962-31427093) | |
| 618-722, gnl|Mm7|chr6 (31426966-31427070) | |
| 618-722, gnl|monDom2|scaffold_22 (13165095-13164971) | |
| 618-722, gnl|oryCun1|scaffold_162197 (7118-7252) | |
| 618-722, gnl|panTro1|chr6 (133200350-133200483) | |
| 618-722, gnl|rheMac2|chr3 (168850954-168851087) | |
| 618-722, gnl|rn3|chr4 (58861272-58861403) | |
| 618-722, gnl|tetNig1|chrUn_random (115981916-115981798) | |
| 618-722, gnl|xenTro1|scaffold_20 (835134-835250) | |
| 776-1164, gnl|bosTau2|chr4 (52219405-52219016) | |
| 776-1164, gnl|Hg17|chr7 (130629619-130630023) | |
| 776-1164, gnl|Mm7|chr6 (31437922-31438301) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| amn (0.417711) | |
| pla (0.401016) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| pla (0.401016) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ldo (0.0970026) |