Non-Coding RNA Search

Ss1.1-rplac_13109.5

Sequence:


               
               AGCAGCGGCTGCAGCGGCGGCGGCGGCGGCCTGAAAGGGGTAGGCGCCGATGTCCTCCAC
GCTCAGGGGCCGCCACTGGCCGCGCGCATCCTCCCCGACCAGCCGGGCTGACCCCGGCTT
GGCCCGCAGGTTCCACAGATTAGGGGGCATCAGGGCCTGCTGGGGCCCTGGGGAGACCGA
GGGCGCCGGGAAGCGGTAGGGCTCGGCCGGGTACGGGGACACAGTCCGAGGGTACCCCGG
GGCTACCGCGGCCTCGAGCGGGGCGGCCACCGCGGCGGCGGCGGCGGCGGCGGCAGCCGC
ATAGCGCGGGCTGCTCTCGTAGGCCGCGGGCGGCTTGCGGCCGAACAGCTCATCGCGGCT
ATTCAGGTAGATGGCCTGCTGGGAGGCCGTGAGCGTGCTGGCCTGGGCGTGCTCCTTCTC
CTCCGAGGTGGCGCTGAAGCTCGAGTAGGAGCTGGACGTGGGCAGCGAGGCCGCGTAGCC
CGGGAAGGCCTCGTGCCGGTAACTCGCAGGGTAGGCAGCCGCCTCGGCCTCCTCCTCCTC
ATCGGCCGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCGGCTGCAGCGGCGGCGGCGGCGGCCTGAAAGGGGTAGGCGCCGATGTCCTCCAC
GCTCAGGGGCCGCCACTGGCCGCGCGCATCCTCCCCGACCAGCCGGGCTGACCCCGGCTT
GGCCCGCAGGTTCCACAGATTAGGGGGCATCAGGGCCTGCTGGGGCCCTGGGGAGACCGA
GGGCGCCGGGAAGCGGTAGGGCTCGGCCGGGTACGGGGACACAGTCCGAGGGTACCCCGG
GGCTACCGCGGCCTCGAGCGGGGCGGCCACCGCGGCGGCGGCGGCGGCGGCGGCAGCCGC
ATAGCGCGGGCTGCTCTCGTAGGCCGCGGGCGGCTTGCGGCCGAACAGCTCATCGCGGCT
ATTCAGGTAGATGGCCTGCTGGGAGGCCGTGAGCGTGCTGGCCTGGGCGTGCTCCTTCTC
CTCCGAGGTGGCGCTGAAGCTCGAGTAGGAGCTGGACGTGGGCAGCGAGGCCGCGTAGCC
CGGGAAGGCCTCGTGCCGGTAACTCGCAGGGTAGGCAGCCGCCTCGGCCTCCTCCTCCTC
ATCGGCCGCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               90-209, - strand, RNAz p=0.659673

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-209, - strand, RNAz p=0.659673

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-552, gnl|bosTau2|chr21 (45196402-45196922)
               

               
               11-552, gnl|Hg17|chr14 (100074533-100075033)
               

               
               11-552, gnl|Mm7|chr12 (106554659-106555158)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-552, gnl|bosTau2|chr21 (45196402-45196922)
               

               
               11-552, gnl|Hg17|chr14 (100074533-100075033)
               

               
               11-552, gnl|Mm7|chr12 (106554659-106555158)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	11-552, gnl\|bosTau2\|chr21 (45196402-45196922)
	11-552, gnl\|Hg17\|chr14 (100074533-100075033)
	11-552, gnl\|Mm7\|chr12 (106554659-106555158)