Ss1.1-rplac_13181.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGGAGGCACTGGACATCCTGGATGTGGTGACCACCGACCCCCCGCCCGACGTGCACGT GAGCCGCGTTGGGGGCCTGGAGGATCAGCTGAGCGTGCGCTGGGTTTCGCCGCCCGCGCT CAAGGACTTCCTCTTTCAAGCCAAGTACCAGATCCGCTACCGAGTGGAGGACAGCGTGGA CTGGAAGGTGGTGGACGACGTGAGCAACCAGACCTCTTGCCGCCTGGCGGGCCTTAAGCC AGGCACAGTCTACTTTGTGCAAGTGCGCTGCAACCCTTTGGGCATCTATGGCTCCAAGAA AGCAGGGATCTGGAGCGAGTGGAGCCACCCCACCGCCGCCTCCACCCCCCGCAGTGAGCG CCCGGGCCCGGGCGGCGGGGCGTGCGAGCCGCGGGGCGGCGAGCCGAGCTCGGGGCCGGT GCGGCGCGAGCTCAAGCAGTTTCTGGGCTGGCTCAAGAAGCACGCGTACTGCTCAAACCT CAGCTTCCGCCTCTACGACCAGTGGCGCGCCTGGATGCAGAAGTCACATAAGACCCGCAA CCAGGACGAGGGGATCCTGCCCTCGGGCAGACGGGGCGCGGCGAGAGGTCCTGCCAGATA AGCTCTAGAGGCTGGGGCTGCCCTCCTTGCTTCATGGAGACCCAGGGGCCACCCCAAGAC TGGAGCCACCTCGGAACCCTCATCCCAGGGTGCCTCAGCCCTCGAAGCTGGGGCAAACGC TCTGAGCTCTGAGGGCCACAACAGCTTTGGCTTCCATGTGAGGTGTACCCCAGTGTGGGG GGGGTGTATGAGGGTGGGCTGAACTTCAAAGAACGCCTGCCAGGGCTGGGGGTGAAGAAA GGTCATTGCTCGCCCTACCCAGGACCCCTCCAAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGGAGGCACTGGACATCCTGGATGTGGTGACCACCGACCCCCCGCCCGACGTGCACGT GAGCCGCGTTGGGGGCCTGGAGGATCAGCTGAGCGTGCGCTGGGTTTCGCCGCCCGCGCT CAAGGACTTCCTCTTTCAAGCCAAGTACCAGATCCGCTACCGAGTGGAGGACAGCGTGGA CTGGAAGGTGGTGGACGACGTGAGCAACCAGACCTCTTGCCGCCTGGCGGGCCTTAAGCC AGGCACAGTCTACTTTGTGCAAGTGCGCTGCAACCCTTTGGGCATCTATGGCTCCAAGAA AGCAGGGATCTGGAGCGAGTGGAGCCACCCCACCGCCGCCTCCACCCCCCGCAGTGAGCG CCCGGGCCCGGGCGGCGGGGCGTGCGAGCCGCGGGGCGGCGAGCCGAGCTCGGGGCCGGT GCGGCGCGAGCTCAAGCAGTTTCTGGGCTGGCTCAAGAAGCACGCGTACTGCTCAAACCT CAGCTTCCGCCTCTACGACCAGTGGCGCGCCTGGATGCAGAAGTCACATAAGACCCGCAA CCAGGACGAGGGGATCCTGCCCTCGGGCAGACGGGGCGCGGCGAGAGGTCCTGCCAGATA AGCTCTAGAGGCTGGGGCTGCCCTCCTTGCTTCATGGAGACCCAGGGGCCACCCCAAGAC TGGAGCCACCTCGGAACCCTCATCCCAGGGTGCCTCAGCCCTCGAAGCTGGGGCAAACGC TCTGAGCTCTGAGGGCCACAACAGCTTTGGCTTCCATGTGAGGTGTACCCCAGTGTGGGG GGGGTGTATGAGGGTGGGCTGAACTTCAAAGAACGCCTGCCAGGGCTGGGGGTGAAGAAA GGTCATTGCTCGCCCTACCCAGGACCCCTCCAAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 586-842, + strand, RNAz p=0.999899 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 586-842, + strand, RNAz p=0.999899 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004750, + |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 29-190, gnl|bosTau2|chr7 (2034803-2034642) | |
| 29-190, gnl|canFam2|chr20 (47471229-47471075) | |
| 29-190, gnl|danRer3|chr22 (19882359-19882513) | |
| 29-190, gnl|fr1|chrUn (97882451-97882298) | |
| 29-190, gnl|hg17|chr19 (18568695-18568849) | |
| 29-190, gnl|Hg17|chr19 (18568860-18568699) | |
| 29-190, gnl|loxAfr1|scaffold_113249 (4583-4737) | |
| 29-190, gnl|mm7|chr8 (68956190-68956036) | |
| 29-190, gnl|Mm7|chr8 (68956023-68956184) | |
| 29-190, gnl|monDom2|scaffold_75 (1118804-1118958) | |
| 29-190, gnl|panTro1|chr20 (19599047-19599201) | |
| 29-190, gnl|rheMac2|chr19 (18216861-18217015) | |
| 29-190, gnl|rn3|chr16 (19434490-19434644) | |
| 29-190, gnl|tetNig1|chrUn_random (42364029-42364178) | |
| 29-190, gnl|xenTro1|scaffold_1031 (87414-87562) | |
| 334-545, gnl|bosTau2|chr7 (2032495-2032284) | |
| 334-545, gnl|canFam2|chr20 (47473723-47473539) | |
| 334-545, gnl|danRer3|chr22 (19874492-19874672) | |
| 334-545, gnl|echTel1|scaffold_234276 (3802-3986) | |
| 334-545, gnl|fr1|chrUn (97883219-97883044) | |
| 334-545, gnl|galGal2|chr28 (3240925-3240747) | |
| 334-545, gnl|hg17|chr19 (18566041-18566225) | |
| 334-545, gnl|Hg17|chr19 (18566268-18566056) | |
| 334-545, gnl|loxAfr1|scaffold_42866 (39582-39766) | |
| 334-545, gnl|mm7|chr8 (68958651-68958466) | |
| 334-545, gnl|Mm7|chr8 (68958422-68958633) | |
| 334-545, gnl|monDom2|scaffold_75 (1112352-1112529) | |
| 334-545, gnl|panTro1|chr20 (19596396-19596580) | |
| 334-545, gnl|rheMac2|chr19 (18213873-18214057) | |
| 334-545, gnl|rn3|chr16 (19432097-19432281) | |
| 334-545, gnl|tetNig1|chrUn_random (42362751-42362923) | |
| 334-545, gnl|xenTro1|scaffold_1031 (80584-80760) | |
| 586-876, gnl|bosTau2|chr7 (2031635-2031336) | |
| 586-876, gnl|canFam2|chr20 (47474802-47474344) | |
| 586-876, gnl|echTel1|scaffold_234276 (2845-3217) | |
| 586-876, gnl|hg17|chr19 (18564922-18565403) | |
| 586-876, gnl|Hg17|chr19 (18565391-18565078) | |
| 586-876, gnl|loxAfr1|scaffold_42866 (38220-38605) | |
| 586-876, gnl|mm7|chr8 (68959315-68958949) | |
| 586-876, gnl|monDom2|scaffold_75 (1111230-1111758) | |
| 586-876, gnl|panTro1|chr20 (19595280-19595758) | |
| 586-876, gnl|rheMac2|chr19 (18212759-18213238) | |
| 586-876, gnl|rn3|chr16 (19431387-19431766) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-190, gnl|bosTau2|chr7 (2034803-2034642) | |
| 29-190, gnl|canFam2|chr20 (47471229-47471075) | |
| 29-190, gnl|danRer3|chr22 (19882359-19882513) | |
| 29-190, gnl|fr1|chrUn (97882451-97882298) | |
| 29-190, gnl|hg17|chr19 (18568695-18568849) | |
| 29-190, gnl|Hg17|chr19 (18568860-18568699) | |
| 29-190, gnl|loxAfr1|scaffold_113249 (4583-4737) | |
| 29-190, gnl|mm7|chr8 (68956190-68956036) | |
| 29-190, gnl|Mm7|chr8 (68956023-68956184) | |
| 29-190, gnl|monDom2|scaffold_75 (1118804-1118958) | |
| 29-190, gnl|panTro1|chr20 (19599047-19599201) | |
| 29-190, gnl|rheMac2|chr19 (18216861-18217015) | |
| 29-190, gnl|rn3|chr16 (19434490-19434644) | |
| 29-190, gnl|tetNig1|chrUn_random (42364029-42364178) | |
| 29-190, gnl|xenTro1|scaffold_1031 (87414-87562) | |
| 334-545, gnl|bosTau2|chr7 (2032495-2032284) | |
| 334-545, gnl|canFam2|chr20 (47473723-47473539) | |
| 334-545, gnl|danRer3|chr22 (19874492-19874672) | |
| 334-545, gnl|echTel1|scaffold_234276 (3802-3986) | |
| 334-545, gnl|fr1|chrUn (97883219-97883044) | |
| 334-545, gnl|galGal2|chr28 (3240925-3240747) | |
| 334-545, gnl|hg17|chr19 (18566041-18566225) | |
| 334-545, gnl|Hg17|chr19 (18566268-18566056) | |
| 334-545, gnl|loxAfr1|scaffold_42866 (39582-39766) | |
| 334-545, gnl|mm7|chr8 (68958651-68958466) | |
| 334-545, gnl|Mm7|chr8 (68958422-68958633) | |
| 334-545, gnl|monDom2|scaffold_75 (1112352-1112529) | |
| 334-545, gnl|panTro1|chr20 (19596396-19596580) | |
| 334-545, gnl|rheMac2|chr19 (18213873-18214057) | |
| 334-545, gnl|rn3|chr16 (19432097-19432281) | |
| 334-545, gnl|tetNig1|chrUn_random (42362751-42362923) | |
| 334-545, gnl|xenTro1|scaffold_1031 (80584-80760) | |
| 586-876, gnl|bosTau2|chr7 (2031635-2031336) | |
| 586-876, gnl|canFam2|chr20 (47474802-47474344) | |
| 586-876, gnl|echTel1|scaffold_234276 (2845-3217) | |
| 586-876, gnl|hg17|chr19 (18564922-18565403) | |
| 586-876, gnl|Hg17|chr19 (18565391-18565078) | |
| 586-876, gnl|loxAfr1|scaffold_42866 (38220-38605) | |
| 586-876, gnl|mm7|chr8 (68959315-68958949) | |
| 586-876, gnl|monDom2|scaffold_75 (1111230-1111758) | |
| 586-876, gnl|panTro1|chr20 (19595280-19595758) | |
| 586-876, gnl|rheMac2|chr19 (18212759-18213238) | |
| 586-876, gnl|rn3|chr16 (19431387-19431766) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) | |
| pla (0.133672) | |
| jca (0.11396) |