Non-Coding RNA Search

Ss1.1-rplac_13191.5

Sequence:


               
               TGCCAGGAAACAACCTGTGGGACCCATGTCCCCGCAAACCAGATACATTTTCCTGAAAAA
AATCTCCACTATTGAGGAGAAGCTGCTCAGTGTTAACCTAGAGTTCTGGTGACTTGGAAG
ATGGTTCTCTTCAAGCATCAGTGGTCAACTCGCAGGAAAAGCACAGGGCCTGCAGGCCAC
TTGTTGGTGTGAGAGTGTGATCTTATGTTCTTGTTTCCACTGTTGGCCTAAGAGATACTG
GCCTGAAATGGGGGATCACATTAGAGGTCACTTGGGCTTTGAAGAGATGGGGTGAAGTTT
GAGTTCAGTTTACCTCCCCCTTTCTGTGCCTGGGAACTGTTTAATCCAGTTTTAGAATTG
TGATTTGACTTCTTTTATTTTTGGAGAAGCTTCTGTTTTAAGGAATTTCTCTTCCTTCTT
ATCCTGCCTCTACCCTCTCCTGGGATGGCCTGGCCATGGCTTCTAGAACTCAGTTGAACT
TCAGAAAACAGCAGCAGTATTTTCCCTTTCCTAGCACTTAAATTCCTTTCCCTAGAAATC
CAGCTCACCTTGGGAAGCCCAGGGGGAAGAATCAGCAGGTTCTCCACCCTCCCTGGGGTT
TAGGGAAAGACCCACCCGGTCAGCACAGTGCCTTTTCCTCCCCTGCTCTGAGCCAGGGTG
GGCGTTCCCTCTTGATTCAGGTCTGGGCAGGGGGTCTTACAGTCTCTGCTGTGGGACTGC
TTCCCCGTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCAGGAAACAACCTGTGGGACCCATGTCCCCGCAAACCAGATACATTTTCCTGAAAAA
AATCTCCACTATTGAGGAGAAGCTGCTCAGTGTTAACCTAGAGTTCTGGTGACTTGGAAG
ATGGTTCTCTTCAAGCATCAGTGGTCAACTCGCAGGAAAAGCACAGGGCCTGCAGGCCAC
TTGTTGGTGTGAGAGTGTGATCTTATGTTCTTGTTTCCACTGTTGGCCTAAGAGATACTG
GCCTGAAATGGGGGATCACATTAGAGGTCACTTGGGCTTTGAAGAGATGGGGTGAAGTTT
GAGTTCAGTTTACCTCCCCCTTTCTGTGCCTGGGAACTGTTTAATCCAGTTTTAGAATTG
TGATTTGACTTCTTTTATTTTTGGAGAAGCTTCTGTTTTAAGGAATTTCTCTTCCTTCTT
ATCCTGCCTCTACCCTCTCCTGGGATGGCCTGGCCATGGCTTCTAGAACTCAGTTGAACT
TCAGAAAACAGCAGCAGTATTTTCCCTTTCCTAGCACTTAAATTCCTTTCCCTAGAAATC
CAGCTCACCTTGGGAAGCCCAGGGGGAAGAATCAGCAGGTTCTCCACCCTCCCTGGGGTT
TAGGGAAAGACCCACCCGGTCAGCACAGTGCCTTTTCCTCCCCTGCTCTGAGCCAGGGTG
GGCGTTCCCTCTTGATTCAGGTCTGGGCAGGGGGTCTTACAGTCTCTGCTGTGGGACTGC
TTCCCCGTCCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               524-713, + strand, RNAz p=0.971357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               524-713, + strand, RNAz p=0.971357

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               606-725, - strand, RNAmicro p=0.99982
               

               
               596-716, + strand, RNAmicro p=0.997371

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               606-725, - strand, RNAmicro p=0.99982
               

               
               596-716, + strand, RNAmicro p=0.997371

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014730, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014730, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-732, gnl|bosTau2|chr17 (36366191-36365512)
               

               
               55-732, gnl|Hg17|chr12 (119600142-119600807)
               

               
               55-732, gnl|Mm7|chr5 (114365923-114365338)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-732, gnl|bosTau2|chr17 (36366191-36365512)
               

               
               55-732, gnl|Hg17|chr12 (119600142-119600807)
               

               
               55-732, gnl|Mm7|chr5 (114365923-114365338)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

	606-725, - strand, RNAmicro p=0.99982
	596-716, + strand, RNAmicro p=0.997371

	55-732, gnl\|bosTau2\|chr17 (36366191-36365512)
	55-732, gnl\|Hg17\|chr12 (119600142-119600807)
	55-732, gnl\|Mm7\|chr5 (114365923-114365338)