Non-Coding RNA Search

Ss1.1-rplac_13255.5

Sequence:


               
               CCACGCGTCCGGGAGTACATTCCTACTGTCATGGGTTGGGGATTTGCCTGACAACAGGGG
GTCTTGTGCAAAGGCTGACTTGTCCAGACTATATAAACATGACTCCTGTCTGACCCAGAC
TGGCACCTCTCCTGGGGATCCTCTGGAGTTAATCCTTCAAGCAGGGTGCTTCAAAGATCC
TTGACCCAGGCTTTAGTTTTCTCCACTGAAGTAAAAGACCAGCTAATCTCAGGAAGTTGT
TGTTTCCCAGTGGCTCCTGGGGAAAGCAAGGGCCTCACACTCTAGGTACCCTAGTACTTG
CTTTAGTGAGCCATGTCACCCTCCTCTCATTACTGGATGGTGACTGCATTCTCCCCCTCT
GTGCTGGATACAGACTTCTCCTAGGAACTCTTCGAGGGAGGGAAGCCAGAGGTTCCCTAC
AGCACTCTCAAGCTTTATAGTGGAATTAATTTCTGTGAGATTTTTGGTGGCTCCTTCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGGGAGTACATTCCTACTGTCATGGGTTGGGGATTTGCCTGACAACAGGGG
GTCTTGTGCAAAGGCTGACTTGTCCAGACTATATAAACATGACTCCTGTCTGACCCAGAC
TGGCACCTCTCCTGGGGATCCTCTGGAGTTAATCCTTCAAGCAGGGTGCTTCAAAGATCC
TTGACCCAGGCTTTAGTTTTCTCCACTGAAGTAAAAGACCAGCTAATCTCAGGAAGTTGT
TGTTTCCCAGTGGCTCCTGGGGAAAGCAAGGGCCTCACACTCTAGGTACCCTAGTACTTG
CTTTAGTGAGCCATGTCACCCTCCTCTCATTACTGGATGGTGACTGCATTCTCCCCCTCT
GTGCTGGATACAGACTTCTCCTAGGAACTCTTCGAGGGAGGGAAGCCAGAGGTTCCCTAC
AGCACTCTCAAGCTTTATAGTGGAATTAATTTCTGTGAGATTTTTGGTGGCTCCTTCAAT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               31-131, - strand, RNAz p=0.692683
               

               
               115-226, - strand, RNAz p=0.990511
               

               
               246-430, - strand, RNAz p=0.935433
               

               
               264-383, + strand, RNAz p=0.809989

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               31-131, - strand, RNAz p=0.692683
               

               
               115-226, - strand, RNAz p=0.990511
               

               
               246-430, - strand, RNAz p=0.935433
               

               
               264-383, + strand, RNAz p=0.809989

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR749475, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR749475, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               12-469, gnl|bosTau2|chr18 (14687144-14686689)
               

               
               12-469, gnl|canFam2|chr5 (84237721-84237358)
               

               
               12-469, gnl|echTel1|scaffold_253772 (827-467)
               

               
               12-469, gnl|hg17|chr16 (66890412-66890777)
               

               
               12-469, gnl|Hg17|chr16 (66890463-66890940)
               

               
               12-469, gnl|mm7|chr8 (104797556-104797861)
               

               
               12-469, gnl|Mm7|chr8 (104797600-104798013)
               

               
               12-469, gnl|oryCun1|scaffold_206981 (83833-84173)
               

               
               12-469, gnl|panTro1|chr18 (61203832-61204197)
               

               
               12-469, gnl|rheMac2|chr20 (66649478-66649862)
               

               
               12-469, gnl|rn3|chr19 (36054255-36054564)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-469, gnl|bosTau2|chr18 (14687144-14686689)
               

               
               12-469, gnl|canFam2|chr5 (84237721-84237358)
               

               
               12-469, gnl|echTel1|scaffold_253772 (827-467)
               

               
               12-469, gnl|hg17|chr16 (66890412-66890777)
               

               
               12-469, gnl|Hg17|chr16 (66890463-66890940)
               

               
               12-469, gnl|mm7|chr8 (104797556-104797861)
               

               
               12-469, gnl|Mm7|chr8 (104797600-104798013)
               

               
               12-469, gnl|oryCun1|scaffold_206981 (83833-84173)
               

               
               12-469, gnl|panTro1|chr18 (61203832-61204197)
               

               
               12-469, gnl|rheMac2|chr20 (66649478-66649862)
               

               
               12-469, gnl|rn3|chr19 (36054255-36054564)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	31-131, - strand, RNAz p=0.692683
	115-226, - strand, RNAz p=0.990511
	246-430, - strand, RNAz p=0.935433
	264-383, + strand, RNAz p=0.809989

	12-469, gnl\|bosTau2\|chr18 (14687144-14686689)
	12-469, gnl\|canFam2\|chr5 (84237721-84237358)
	12-469, gnl\|echTel1\|scaffold_253772 (827-467)
	12-469, gnl\|hg17\|chr16 (66890412-66890777)
	12-469, gnl\|Hg17\|chr16 (66890463-66890940)
	12-469, gnl\|mm7\|chr8 (104797556-104797861)
	12-469, gnl\|Mm7\|chr8 (104797600-104798013)
	12-469, gnl\|oryCun1\|scaffold_206981 (83833-84173)
	12-469, gnl\|panTro1\|chr18 (61203832-61204197)
	12-469, gnl\|rheMac2\|chr20 (66649478-66649862)
	12-469, gnl\|rn3\|chr19 (36054255-36054564)