Non-Coding RNA Search

Ss1.1-rplac_13346.5

Sequence:


               
               TGGTGCTCCAGGACGCCCCCGGGACACTGCGGCAGCTCTCAAGACTCTGTGTCCTGAGGC
AGGAGCTGAGACTACCCGCTGTGGCAGACAGCACTCAGCCCCGAGCTGCCATTGAAACCC
CGTCACTCTGGCACCTCTGCAGTATGAGGGGCCTGAGCTCCTGGCCGTGGCCGTGCAGAG
TGAATGAAGCTCAACTCACCTTTTCGGATTTCTCACCTTTCTTTCCCGGCTCTGGGACCC
TGTGGCAGACAGGCCACGCGAGGATCAGGACCGGGCCCAGCCAGGAGAGCTGGGGGACTG
CAGTGCTCTGCCTCGGTGCTGCCTTAGTTTGGTGCAGCCCTCGGGTTGGTAGGGAAGTGA
GTGGCCACTGGCGAGACCCTGCTCAGCATCTGCCTTCAGCGTTCAGCTCCACTGTGGGAT
GGAGTGTTAGGAAATAGCAAAACAGGAAAACAGTTCTAAAAAACAGCTGCACAAACCAGA
ACACTGATTTAGAATGTTTGTCCTCCTTGAATTTTTACCAAATGCTTTATAATTGATTTT
GCTTTGCCCCCTCTACCTTTCCCTTGCAGGAGGGGACGGTTGTCTGGATCTTTGTCTGAG
TCGGGAGTCCTGAGCCATGCTCTGTCATGGAGCCATCACTCCAGAGCTCAGTAGGGTGGG
AAGGCCACTGTAAAAGCTGGTCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGCTCCAGGACGCCCCCGGGACACTGCGGCAGCTCTCAAGACTCTGTGTCCTGAGGC
AGGAGCTGAGACTACCCGCTGTGGCAGACAGCACTCAGCCCCGAGCTGCCATTGAAACCC
CGTCACTCTGGCACCTCTGCAGTATGAGGGGCCTGAGCTCCTGGCCGTGGCCGTGCAGAG
TGAATGAAGCTCAACTCACCTTTTCGGATTTCTCACCTTTCTTTCCCGGCTCTGGGACCC
TGTGGCAGACAGGCCACGCGAGGATCAGGACCGGGCCCAGCCAGGAGAGCTGGGGGACTG
CAGTGCTCTGCCTCGGTGCTGCCTTAGTTTGGTGCAGCCCTCGGGTTGGTAGGGAAGTGA
GTGGCCACTGGCGAGACCCTGCTCAGCATCTGCCTTCAGCGTTCAGCTCCACTGTGGGAT
GGAGTGTTAGGAAATAGCAAAACAGGAAAACAGTTCTAAAAAACAGCTGCACAAACCAGA
ACACTGATTTAGAATGTTTGTCCTCCTTGAATTTTTACCAAATGCTTTATAATTGATTTT
GCTTTGCCCCCTCTACCTTTCCCTTGCAGGAGGGGACGGTTGTCTGGATCTTTGTCTGAG
TCGGGAGTCCTGAGCCATGCTCTGTCATGGAGCCATCACTCCAGAGCTCAGTAGGGTGGG
AAGGCCACTGTAAAAGCTGGTCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               549-661, - strand, RNAz p=0.784495

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               549-661, - strand, RNAz p=0.784495

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-680, gnl|bosTau2|chr26 (30167229-30166536)
               

               
               1-680, gnl|Hg17|chr15 (40799081-40799782)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-680, gnl|bosTau2|chr26 (30167229-30166536)
               

               
               1-680, gnl|Hg17|chr15 (40799081-40799782)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

	1-680, gnl\|bosTau2\|chr26 (30167229-30166536)
	1-680, gnl\|Hg17\|chr15 (40799081-40799782)