Non-Coding RNA Search

Ss1.1-rplac_13492.5

Sequence:


               
               TTCTCTGAGTAGAGCTCTTGGAGAATTACACATCTCTTCATGGGCCATTTTTCTCATATT
TAGATACACCTATTTTTATCCTTGGCAAGCCTTCTGCCTTCTCGTTTTTCTGTCTCTTAA
GGACAGAAACTCTAAGAAGCGGAGAGGATAATTTTAGCATCTGTTTCAGTGGATCCATGC
CAGGTTTTCCATGCACACCGAGAACCAGATCCGGGAACACCGCTTTCCTCCGAGTCAGGT
TCTAGTGCCTTACACTCCAGAGTGTCACATGGTGGGTGAGGACAGGAAGGACGGAGAAAA
AGTACCTTCGGCAGATGACTGGGAGTTGAAAGCTGCTGCAGCTCGTTTCAGCGAGAGGTC
TCCAAGCAGCACAGCCAATCCCCTCCTCTTTGGTCAACTCCTGGGAGGTATGAAAACACC
TCTGCAAGTACTGTCAAGTGCTGGAACTCATTTGCATTTGTCAGTGTGCAGCTCAGCCCA
GCCTCTTCAGTCTCAGTGTAGCGTCAGCATGTGGTCCTGAAGATGTTCAAGGCACTTTAG
TAACTGGGCTCGTCCCCTGAGCCCTGGTGAGAAGGGCACACACGGGGACCGAGCGTTTCT
GCCCTGTGAGAATGCCGGATTAACAGTGCGCACTGTATTTCTATCAAGCCAGACTTCAAT
TATGATTTCATGTTACTAAGTTTATAAATGAATAAACAGACATTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCTGAGTAGAGCTCTTGGAGAATTACACATCTCTTCATGGGCCATTTTTCTCATATT
TAGATACACCTATTTTTATCCTTGGCAAGCCTTCTGCCTTCTCGTTTTTCTGTCTCTTAA
GGACAGAAACTCTAAGAAGCGGAGAGGATAATTTTAGCATCTGTTTCAGTGGATCCATGC
CAGGTTTTCCATGCACACCGAGAACCAGATCCGGGAACACCGCTTTCCTCCGAGTCAGGT
TCTAGTGCCTTACACTCCAGAGTGTCACATGGTGGGTGAGGACAGGAAGGACGGAGAAAA
AGTACCTTCGGCAGATGACTGGGAGTTGAAAGCTGCTGCAGCTCGTTTCAGCGAGAGGTC
TCCAAGCAGCACAGCCAATCCCCTCCTCTTTGGTCAACTCCTGGGAGGTATGAAAACACC
TCTGCAAGTACTGTCAAGTGCTGGAACTCATTTGCATTTGTCAGTGTGCAGCTCAGCCCA
GCCTCTTCAGTCTCAGTGTAGCGTCAGCATGTGGTCCTGAAGATGTTCAAGGCACTTTAG
TAACTGGGCTCGTCCCCTGAGCCCTGGTGAGAAGGGCACACACGGGGACCGAGCGTTTCT
GCCCTGTGAGAATGCCGGATTAACAGTGCGCACTGTATTTCTATCAAGCCAGACTTCAAT
TATGATTTCATGTTACTAAGTTTATAAATGAATAAACAGACATTTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               30-183, + strand, RNAz p=0.997753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-183, + strand, RNAz p=0.997753

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-698, gnl|bosTau2|chr18 (605946-605255)
               

               
               1-698, gnl|Hg17|chr16 (68753173-68753924)
               

               
               1-698, gnl|Mm7|chr8 (109739255-109739931)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-698, gnl|bosTau2|chr18 (605946-605255)
               

               
               1-698, gnl|Hg17|chr16 (68753173-68753924)
               

               
               1-698, gnl|Mm7|chr8 (109739255-109739931)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.135208)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               pla (0.133672)

	1-698, gnl\|bosTau2\|chr18 (605946-605255)
	1-698, gnl\|Hg17\|chr16 (68753173-68753924)
	1-698, gnl\|Mm7\|chr8 (109739255-109739931)