Non-Coding RNA Search

Ss1.1-rplac_13531.5

Sequence:


               
               CCTCCCTCCCTCCCACCCACTGTGGCTGCAGGAGACGCCAGGGACCTGACATCAACCGAG
GGCCCTGGACTCCCAAGGCTGGAGCCTTGCAGATGCCAAAGTAACTGGAATCCAATCTTC
GATCCTCCCCGTCTGGCCCTGGAAGCTGCCCTCACATTCCAACGATGAAGGACCAACTGT
CCAGGTTGGAGGCCACACTAGAGGCGGGACCCTTGTGAGGTGCTGGCAGGTGGCCACGGA
GCAGGGGGCCCACCTTCCGCTGCTGCCTCCCCCAGGAGTTGCTACTCCGCCTGCTCAGAG
ATCAGTGCTTGGCTGGCTGGCTTGGCCTTGACTGATCAAATGTTCAAGAGACTGAGCCCC
AAAGGAAAATCAAGCAGGACTTGGACACCTGCCCTGCAAATATGGGCTGAACGAGGGATT
TCAGTCACCCACATGGGGTTCCTGTTGCAGGAGCGCTTTGTCAAGACGGGAAGGGGGCGG
GCCTGGAGGATTGCCACATCTTGCGTGTCTCCATGCCTGTGGGTGTTCGCCGCGCCTCCA
CGCACACACGCCCGTGCGTGCCCATCTGCTGCGCACAGCATGTCTTGCACCTGCACATGC
ATCTGTAATATAGTTTCTATGTCTATTTAAGGCTCTGAGCAGAATGCGGCCCGTTGTCAC
TGGGTCCACACTTCTCCCTGCTCCTCTGCACTAAGTTGTTGTAACCCGGGGCTTAAACGG
TACTTCCGTACTGTTCTTAAGAACACTTTTATAGAGTTCGTGGCAGGCCGTGCACGGATC
AGCACATTTTCCTTGAGCAGCTCTGCACTGGAGCCGGGAGGGTAAGGTTTCAGGGGACAC
CCCCCCCCAACCTTGTGGAGCCCAAAGGTGGGCCTAGCTCCCTTGCTCTGCTTGTGTCAG
AGCCCCAGTGGGGTGCTCCCCGCATCACTGGGGGAGTTGGTTGGCGTCATTGTTTCTGAA
TGTAGCACAAGGGATGGACAAACTCCATAAGAGTGTTTTAAAAATTAACTTCCCAGGAAG
TGAGTTAAAAACAATAAAAGCCCTTTCTTGAGTTAAAATACAAAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCTCCCTCCCACCCACTGTGGCTGCAGGAGACGCCAGGGACCTGACATCAACCGAG
GGCCCTGGACTCCCAAGGCTGGAGCCTTGCAGATGCCAAAGTAACTGGAATCCAATCTTC
GATCCTCCCCGTCTGGCCCTGGAAGCTGCCCTCACATTCCAACGATGAAGGACCAACTGT
CCAGGTTGGAGGCCACACTAGAGGCGGGACCCTTGTGAGGTGCTGGCAGGTGGCCACGGA
GCAGGGGGCCCACCTTCCGCTGCTGCCTCCCCCAGGAGTTGCTACTCCGCCTGCTCAGAG
ATCAGTGCTTGGCTGGCTGGCTTGGCCTTGACTGATCAAATGTTCAAGAGACTGAGCCCC
AAAGGAAAATCAAGCAGGACTTGGACACCTGCCCTGCAAATATGGGCTGAACGAGGGATT
TCAGTCACCCACATGGGGTTCCTGTTGCAGGAGCGCTTTGTCAAGACGGGAAGGGGGCGG
GCCTGGAGGATTGCCACATCTTGCGTGTCTCCATGCCTGTGGGTGTTCGCCGCGCCTCCA
CGCACACACGCCCGTGCGTGCCCATCTGCTGCGCACAGCATGTCTTGCACCTGCACATGC
ATCTGTAATATAGTTTCTATGTCTATTTAAGGCTCTGAGCAGAATGCGGCCCGTTGTCAC
TGGGTCCACACTTCTCCCTGCTCCTCTGCACTAAGTTGTTGTAACCCGGGGCTTAAACGG
TACTTCCGTACTGTTCTTAAGAACACTTTTATAGAGTTCGTGGCAGGCCGTGCACGGATC
AGCACATTTTCCTTGAGCAGCTCTGCACTGGAGCCGGGAGGGTAAGGTTTCAGGGGACAC
CCCCCCCCAACCTTGTGGAGCCCAAAGGTGGGCCTAGCTCCCTTGCTCTGCTTGTGTCAG
AGCCCCAGTGGGGTGCTCCCCGCATCACTGGGGGAGTTGGTTGGCGTCATTGTTTCTGAA
TGTAGCACAAGGGATGGACAAACTCCATAAGAGTGTTTTAAAAATTAACTTCCCAGGAAG
TGAGTTAAAAACAATAAAAGCCCTTTCTTGAGTTAAAATACAAAAGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               807-934, - strand, RNAz p=0.994757

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               807-934, - strand, RNAz p=0.994757

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-934, gnl|bosTau2|chr19 (19063880-19062949)
               

               
               20-934, gnl|Hg17|chr17 (3711414-3710557)
               

               
               20-934, gnl|Mm7|chr11 (73122625-73123442)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-934, gnl|bosTau2|chr19 (19063880-19062949)
               

               
               20-934, gnl|Hg17|chr17 (3711414-3710557)
               

               
               20-934, gnl|Mm7|chr11 (73122625-73123442)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sme (0.305437)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)

	20-934, gnl\|bosTau2\|chr19 (19063880-19062949)
	20-934, gnl\|Hg17\|chr17 (3711414-3710557)
	20-934, gnl\|Mm7\|chr11 (73122625-73123442)