Non-Coding RNA Search

Ss1.1-rplac_13549.5

Sequence:


               
               GCTAATCGCGTGTCTGTGCCACGACCTGGGACACAGGGCTTCAGCAACAGCTACCTGCGA
AAAATTCGACCACCCCCTGGCCGCTCTCTACTCCACGTCCACCATGGAGCAGCACCACTT
CTCCCAGACCGTGTCCATCCTCCAGTTGGAAGGGCACAACATCTTCTCCACCCTGAGCTC
CAGTGAGTACGAGCAGGTGCTTGAGATCATCCGCAAAGCCATCATTGCCACAGACCTCGC
TTTGTACTTTGGAAACAGGAAACAGTTGGAGGAGATGTACCAGACCGGATCGCTAAACCT
TAATAACCAGTCACATAGAGACCGCGTCATTGGTTTGATGATGACTGCCTGTGATCTCTG
TTCCGTGACAAAACTGTGGCCAGTAACAAAACTGACAGCAAATGATATATATGCGGAATT
CTGGGCCGAGGAATAACCTGAGCCAGTGGGAGAAGGTGATTCGTGGGGAGGAGAGCGCCG
TGTGGATCTCCAGCCCGCCCGCGGCCCAGGGCACCTCGGAGAAGCTGCCCGTGAAGATTG
ATGACTGAGGCCGCGGACGCGCTGCCCCGCCCGCCAAGAGATGTTCATCCTGCTTCTTTG
ACTTTTCTTCCTTTTATTTTTGTGGGGGAACCTACACCTGGTAACTGGGATGCAAACCTC
TTCAAGAAGGTACCACCAAGTACGTTTGCCCGCAGATGGCTCCCTGCCAGCCTCCTCTGG
GACGCGTCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAATCGCGTGTCTGTGCCACGACCTGGGACACAGGGCTTCAGCAACAGCTACCTGCGA
AAAATTCGACCACCCCCTGGCCGCTCTCTACTCCACGTCCACCATGGAGCAGCACCACTT
CTCCCAGACCGTGTCCATCCTCCAGTTGGAAGGGCACAACATCTTCTCCACCCTGAGCTC
CAGTGAGTACGAGCAGGTGCTTGAGATCATCCGCAAAGCCATCATTGCCACAGACCTCGC
TTTGTACTTTGGAAACAGGAAACAGTTGGAGGAGATGTACCAGACCGGATCGCTAAACCT
TAATAACCAGTCACATAGAGACCGCGTCATTGGTTTGATGATGACTGCCTGTGATCTCTG
TTCCGTGACAAAACTGTGGCCAGTAACAAAACTGACAGCAAATGATATATATGCGGAATT
CTGGGCCGAGGAATAACCTGAGCCAGTGGGAGAAGGTGATTCGTGGGGAGGAGAGCGCCG
TGTGGATCTCCAGCCCGCCCGCGGCCCAGGGCACCTCGGAGAAGCTGCCCGTGAAGATTG
ATGACTGAGGCCGCGGACGCGCTGCCCCGCCCGCCAAGAGATGTTCATCCTGCTTCTTTG
ACTTTTCTTCCTTTTATTTTTGTGGGGGAACCTACACCTGGTAACTGGGATGCAAACCTC
TTCAAGAAGGTACCACCAAGTACGTTTGCCCGCAGATGGCTCCCTGCCAGCCTCCTCTGG
GACGCGTCAGAG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               131-318, gnl|bosTau2|chr9 (62836339-62836525)
               

               
               131-318, gnl|Hg17|chr6 (165763275-165763094)
               

               
               131-318, gnl|Mm7|chr17 (7684371-7684555)
               


               
               429-716, gnl|bosTau2|chr9 (62852357-62852645)
               

               
               429-716, gnl|Hg17|chr6 (165717029-165716747)
               

               
               429-716, gnl|Mm7|chr17 (7696386-7696661)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-318, gnl|bosTau2|chr9 (62836339-62836525)
               

               
               131-318, gnl|Hg17|chr6 (165763275-165763094)
               

               
               131-318, gnl|Mm7|chr17 (7684371-7684555)
               


               
               429-716, gnl|bosTau2|chr9 (62852357-62852645)
               

               
               429-716, gnl|Hg17|chr6 (165717029-165716747)
               

               
               429-716, gnl|Mm7|chr17 (7696386-7696661)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	131-318, gnl\|bosTau2\|chr9 (62836339-62836525)
	131-318, gnl\|Hg17\|chr6 (165763275-165763094)
	131-318, gnl\|Mm7\|chr17 (7684371-7684555)

	429-716, gnl\|bosTau2\|chr9 (62852357-62852645)
	429-716, gnl\|Hg17\|chr6 (165717029-165716747)
	429-716, gnl\|Mm7\|chr17 (7696386-7696661)