Non-Coding RNA Search

Ss1.1-rplac_13592.5

Sequence:


               
               ATTCGGGCGAGGGCGGAGAGGGCTCAGACACCTGGAGAAGGAACCCGCCACAGTCTGGCC
ACCTGCCCAGCCAGGTGTACCAGCAAAGAGCTCCTTGGCTATGCTTTTGTCCCGCTGCTG
TCCTGGGAGGCTGGGTGGCAGGCTGAGGAGAGAGGTTTGGGCTGACTTCAGACAGCTCCT
CCTATTCAGCCTGCAAATTTGTCTTACAGAACCCGGGTTCTCCCTTCCCTCAAAGCTGCT
ACAACTTTCTTTGAAAGTCTAAACTGCCCGAGGCCTCCTTTTTTCCTTCCTCTCTCCTTC
CCCGGTTTCCTCTGCCCCAATTAAAATCAGGATGGAAAGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGGGCGAGGGCGGAGAGGGCTCAGACACCTGGAGAAGGAACCCGCCACAGTCTGGCC
ACCTGCCCAGCCAGGTGTACCAGCAAAGAGCTCCTTGGCTATGCTTTTGTCCCGCTGCTG
TCCTGGGAGGCTGGGTGGCAGGCTGAGGAGAGAGGTTTGGGCTGACTTCAGACAGCTCCT
CCTATTCAGCCTGCAAATTTGTCTTACAGAACCCGGGTTCTCCCTTCCCTCAAAGCTGCT
ACAACTTTCTTTGAAAGTCTAAACTGCCCGAGGCCTCCTTTTTTCCTTCCTCTCTCCTTC
CCCGGTTTCCTCTGCCCCAATTAAAATCAGGATGGAAAGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               179-341, - strand, RNAz p=0.706816
               

               
               221-341, - strand, RNAz p=0.985409

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-341, - strand, RNAz p=0.706816
               

               
               221-341, - strand, RNAz p=0.985409

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               12-341, gnl|bosTau2|chr3 (7992952-7993292)
               

               
               12-341, gnl|canFam2|chr7 (46300528-46300352)
               

               
               12-341, gnl|hg17|chr1 (150559971-150560227)
               

               
               12-341, gnl|Hg17|chr1 (150560015-150560357)
               

               
               12-341, gnl|loxAfr1|scaffold_2219 (107463-107731)
               

               
               12-341, gnl|mm7|chr3 (90521529-90521291)
               

               
               12-341, gnl|Mm7|chr3 (90521499-90521171)
               

               
               12-341, gnl|monDom2|scaffold_59 (4300249-4299987)
               

               
               12-341, gnl|panTro1|chr1 (132539910-132540165)
               

               
               12-341, gnl|rheMac2|chr1 (132287554-132287811)
               

               
               12-341, gnl|rn3|chr2 (182599639-182599400)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-341, gnl|bosTau2|chr3 (7992952-7993292)
               

               
               12-341, gnl|canFam2|chr7 (46300528-46300352)
               

               
               12-341, gnl|hg17|chr1 (150559971-150560227)
               

               
               12-341, gnl|Hg17|chr1 (150560015-150560357)
               

               
               12-341, gnl|loxAfr1|scaffold_2219 (107463-107731)
               

               
               12-341, gnl|mm7|chr3 (90521529-90521291)
               

               
               12-341, gnl|Mm7|chr3 (90521499-90521171)
               

               
               12-341, gnl|monDom2|scaffold_59 (4300249-4299987)
               

               
               12-341, gnl|panTro1|chr1 (132539910-132540165)
               

               
               12-341, gnl|rheMac2|chr1 (132287554-132287811)
               

               
               12-341, gnl|rn3|chr2 (182599639-182599400)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

	179-341, - strand, RNAz p=0.706816
	221-341, - strand, RNAz p=0.985409

	12-341, gnl\|bosTau2\|chr3 (7992952-7993292)
	12-341, gnl\|canFam2\|chr7 (46300528-46300352)
	12-341, gnl\|hg17\|chr1 (150559971-150560227)
	12-341, gnl\|Hg17\|chr1 (150560015-150560357)
	12-341, gnl\|loxAfr1\|scaffold_2219 (107463-107731)
	12-341, gnl\|mm7\|chr3 (90521529-90521291)
	12-341, gnl\|Mm7\|chr3 (90521499-90521171)
	12-341, gnl\|monDom2\|scaffold_59 (4300249-4299987)
	12-341, gnl\|panTro1\|chr1 (132539910-132540165)
	12-341, gnl\|rheMac2\|chr1 (132287554-132287811)
	12-341, gnl\|rn3\|chr2 (182599639-182599400)