Non-Coding RNA Search

Ss1.1-rplac_13636.5

Sequence:


               
               GGCCAGAGCGTGGTGATGGAGTGTGTGGCCTCGGCTGACCCCACCCCTATCGTGTCCTGG
GTCCGACAGGACGGGAAGCCTATTTCTACCGATGTCATCGTCCTGGGCCGCACCAACCTG
CTAATCACCAGCGCGCANCCCGGCACTCTGGCGTCTACGTCTGCAGAGCCAACAAGCCCC
GTACGCGCGACTTTGCCACCGCCGCCGCCGAGCTCCGCGTGCTGGCGGCTCCTGCCATCT
CGCAGGCGCCCGAGGCGCTATCTCGGACGAGGGCGAGCACCGCGCGCTTCGTGTGCCGCG
CAACGGGTGAGCCGCGGCCCGCGTTGCGGTGGCTGCACAACGGGGCGCCGCTGCGGCCCA
ACGGGCGTGTCAAGGTGCAGGGCGGCGGCAGCAGCCTGGTCATCACGCAGATCGGCCTGC
AGGATGCCGGCTACTACCAGTGCGTGGCCGAGAACAACGCGGGCACGGCGTGCGCCGCCG
CGCCGCTGGCAGTAGTAGTGCGCGAGGGTCTGCCCAGCGCCCCCACGCGGGTCACCGCCA
CGCCCCTGAGCAGCTCCACTGTGCTGGTGGCCTGGGAGCGGCCCGAGCTGCACAGCGAGC
AGATCATCGGTTTCTCCCTTCACTACCAGAAGGCACGGGGCATGGACAGTGTGGAATACC
AGTTTGCCGTGAACAATGACACCACTGAGCTACAGGTTCGGGACCTGGAGCCCAACACAG
ACTATGAGTTCTATGTGGTGGCCTACTCACAGCTGGGGGCCAGCCGCACCTCCACCCCAG
CGCTGGTCCACACATTGGATGATGTCCCCAGTGCAGCACCCCAGCTCTCCCTGTCCAGCC
CCAACCCCTCGGACATCAGGGTGGCGTGGCTGCCCCTGCCTCCCAGCCTGAGCAATGGGC
AGGTGGTGAAGTACAAGATAGAATACGGTTTGGGAAAGGAAGATCAGATTTTCTCCACTG
AGGTGCCAGGGAATGAGACGCAGTTTACACTGAATTCACTTCAGCCCAACAAGGTGTATC
GAGTGCGGATTTCGGCTGGCACAGGGGCTGGATTTGGGGCCCCCTCCCAGTGGATGCAGC
ACAGGACGCCCAGTACACACAACCAGAGCCACGGTACGGGGTCAGAGGGGACAGGCAAGT
GATGTGTGTGCATGGGTATATGTGTGTCCTGGGAGTTCAAACCCAAAGACCCTGCCCAGA
GACCTTCCATGGCTCCCCCTGCTGGATGGGCAAGGGGGGATGGGTGAAAGGCCAATGGTG
TGGCCTTTGCGGATACTCCTGGGCTCATGTCCCTTCCCTCTGCTGTGTGACCTTGGACAA
GCCATTCAAAACTCCATCACTTCGTTTACTCCCAGGCATGGCATGAGGATTGATTAATGT
ATTGTAGACAAAGTATTTAGTACAGAATCAGACATTGTTAAATAGCAGCTGCTTCTATGA
TTATGATTGTTGTGTGTTTTGTTGAGAAGCCCAATGTTAAAATGATTAAATGCAGACAAA
ACCTGGCACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGAGCGTGGTGATGGAGTGTGTGGCCTCGGCTGACCCCACCCCTATCGTGTCCTGG
GTCCGACAGGACGGGAAGCCTATTTCTACCGATGTCATCGTCCTGGGCCGCACCAACCTG
CTAATCACCAGCGCGCANCCCGGCACTCTGGCGTCTACGTCTGCAGAGCCAACAAGCCCC
GTACGCGCGACTTTGCCACCGCCGCCGCCGAGCTCCGCGTGCTGGCGGCTCCTGCCATCT
CGCAGGCGCCCGAGGCGCTATCTCGGACGAGGGCGAGCACCGCGCGCTTCGTGTGCCGCG
CAACGGGTGAGCCGCGGCCCGCGTTGCGGTGGCTGCACAACGGGGCGCCGCTGCGGCCCA
ACGGGCGTGTCAAGGTGCAGGGCGGCGGCAGCAGCCTGGTCATCACGCAGATCGGCCTGC
AGGATGCCGGCTACTACCAGTGCGTGGCCGAGAACAACGCGGGCACGGCGTGCGCCGCCG
CGCCGCTGGCAGTAGTAGTGCGCGAGGGTCTGCCCAGCGCCCCCACGCGGGTCACCGCCA
CGCCCCTGAGCAGCTCCACTGTGCTGGTGGCCTGGGAGCGGCCCGAGCTGCACAGCGAGC
AGATCATCGGTTTCTCCCTTCACTACCAGAAGGCACGGGGCATGGACAGTGTGGAATACC
AGTTTGCCGTGAACAATGACACCACTGAGCTACAGGTTCGGGACCTGGAGCCCAACACAG
ACTATGAGTTCTATGTGGTGGCCTACTCACAGCTGGGGGCCAGCCGCACCTCCACCCCAG
CGCTGGTCCACACATTGGATGATGTCCCCAGTGCAGCACCCCAGCTCTCCCTGTCCAGCC
CCAACCCCTCGGACATCAGGGTGGCGTGGCTGCCCCTGCCTCCCAGCCTGAGCAATGGGC
AGGTGGTGAAGTACAAGATAGAATACGGTTTGGGAAAGGAAGATCAGATTTTCTCCACTG
AGGTGCCAGGGAATGAGACGCAGTTTACACTGAATTCACTTCAGCCCAACAAGGTGTATC
GAGTGCGGATTTCGGCTGGCACAGGGGCTGGATTTGGGGCCCCCTCCCAGTGGATGCAGC
ACAGGACGCCCAGTACACACAACCAGAGCCACGGTACGGGGTCAGAGGGGACAGGCAAGT
GATGTGTGTGCATGGGTATATGTGTGTCCTGGGAGTTCAAACCCAAAGACCCTGCCCAGA
GACCTTCCATGGCTCCCCCTGCTGGATGGGCAAGGGGGGATGGGTGAAAGGCCAATGGTG
TGGCCTTTGCGGATACTCCTGGGCTCATGTCCCTTCCCTCTGCTGTGTGACCTTGGACAA
GCCATTCAAAACTCCATCACTTCGTTTACTCCCAGGCATGGCATGAGGATTGATTAATGT
ATTGTAGACAAAGTATTTAGTACAGAATCAGACATTGTTAAATAGCAGCTGCTTCTATGA
TTATGATTGTTGTGTGTTTTGTTGAGAAGCCCAATGTTAAAATGATTAAATGCAGACAAA
ACCTGGCACACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61822881|ref|XP_597147.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822881|ref|XP_597147.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               225-640, gnl|bosTau2|chr10 (8776694-8776279)
               

               
               225-640, gnl|Hg17|chr15 (63475555-63475140)
               

               
               225-640, gnl|Mm7|chr9 (65153416-65153831)
               


               
               941-1381, gnl|bosTau2|chr10 (8774182-8773743)
               

               
               941-1381, gnl|Hg17|chr15 (63472924-63472490)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               225-640, gnl|bosTau2|chr10 (8776694-8776279)
               

               
               225-640, gnl|Hg17|chr15 (63475555-63475140)
               

               
               225-640, gnl|Mm7|chr9 (65153416-65153831)
               


               
               941-1381, gnl|bosTau2|chr10 (8774182-8773743)
               

               
               941-1381, gnl|Hg17|chr15 (63472924-63472490)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	225-640, gnl\|bosTau2\|chr10 (8776694-8776279)
	225-640, gnl\|Hg17\|chr15 (63475555-63475140)
	225-640, gnl\|Mm7\|chr9 (65153416-65153831)

	941-1381, gnl\|bosTau2\|chr10 (8774182-8773743)
	941-1381, gnl\|Hg17\|chr15 (63472924-63472490)