Non-Coding RNA Search

Ss1.1-rplac_13780.5

Sequence:


               
               TATGTGTGTTTTGAGAATATTTGAATTGAATTAGATTTCTCTTTCAGAGCAAAAAAAGTG
TTTTAATAAGCTGAAAAATAATTAAATGATAGGCTGACTGTCATTTGTATAATGATGAAA
ATATATTAAAATGTGTCTTTAGTCTTCTGTGCTCTTTTTAGCCAGAGACTGTTAAACATT
AAGGTATCAGGAAGAAAGTTGTCCTAAGCAATGAACTCAGAAAATATATTGTACATTTAG
CTAGTTCATTTTTAAAACAGAAGGGGGTTGATTGAGATGTTCTCTTTGTGGTTAAATGGA
ATCAGCTAATATAAAGTAAAAACCAATTCTTTTTAAAAGCATTCTTTTAGCTAGTGTTAA
GAAATCCATATATGAATGAGAGAAGGAGAGATTCTGATTAAGTCTCTTTTGTTTGTTCTG
GAAAAAAAAAAATCCTTGGCATACAATTCCTTTCCTAAATAGGCTTTTTGTTTTGTTTTG
TTTTTTGTAAGCCAAAGTACTAGCAAAGTCTGTGGAATTATTGAGAGGACTATGTATTTG
TATGTAGTAGTGATGTTTTGTTCCCAAAAGTGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTGTGTTTTGAGAATATTTGAATTGAATTAGATTTCTCTTTCAGAGCAAAAAAAGTG
TTTTAATAAGCTGAAAAATAATTAAATGATAGGCTGACTGTCATTTGTATAATGATGAAA
ATATATTAAAATGTGTCTTTAGTCTTCTGTGCTCTTTTTAGCCAGAGACTGTTAAACATT
AAGGTATCAGGAAGAAAGTTGTCCTAAGCAATGAACTCAGAAAATATATTGTACATTTAG
CTAGTTCATTTTTAAAACAGAAGGGGGTTGATTGAGATGTTCTCTTTGTGGTTAAATGGA
ATCAGCTAATATAAAGTAAAAACCAATTCTTTTTAAAAGCATTCTTTTAGCTAGTGTTAA
GAAATCCATATATGAATGAGAGAAGGAGAGATTCTGATTAAGTCTCTTTTGTTTGTTCTG
GAAAAAAAAAAATCCTTGGCATACAATTCCTTTCCTAAATAGGCTTTTTGTTTTGTTTTG
TTTTTTGTAAGCCAAAGTACTAGCAAAGTCTGTGGAATTATTGAGAGGACTATGTATTTG
TATGTAGTAGTGATGTTTTGTTCCCAAAAGTGATTA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-576, gnl|bosTau2|chr11 (75590013-75590593)
               

               
               1-576, gnl|canFam2|chr9 (63102328-63101571)
               

               
               1-576, gnl|dasNov1|scaffold_18656 (44284-44987)
               

               
               1-576, gnl|hg17|chr9 (122878130-122878868)
               

               
               1-576, gnl|Hg17|chr9 (122878212-122878773)
               

               
               1-576, gnl|loxAfr1|scaffold_29831 (16990-16222)
               

               
               1-576, gnl|mm7|chr2 (37526441-37526989)
               

               
               1-576, gnl|monDom2|scaffold_38 (16561343-16562226)
               

               
               1-576, gnl|oryCun1|scaffold_173090 (2131-2857)
               

               
               1-576, gnl|panTro1|chr11 (107583238-107583974)
               

               
               1-576, gnl|rheMac2|chr15 (12690895-12690162)
               

               
               1-576, gnl|rn3|chr3 (17171042-17171673)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr11 (75590013-75590593)
               

               
               1-576, gnl|canFam2|chr9 (63102328-63101571)
               

               
               1-576, gnl|dasNov1|scaffold_18656 (44284-44987)
               

               
               1-576, gnl|hg17|chr9 (122878130-122878868)
               

               
               1-576, gnl|Hg17|chr9 (122878212-122878773)
               

               
               1-576, gnl|loxAfr1|scaffold_29831 (16990-16222)
               

               
               1-576, gnl|mm7|chr2 (37526441-37526989)
               

               
               1-576, gnl|monDom2|scaffold_38 (16561343-16562226)
               

               
               1-576, gnl|oryCun1|scaffold_173090 (2131-2857)
               

               
               1-576, gnl|panTro1|chr11 (107583238-107583974)
               

               
               1-576, gnl|rheMac2|chr15 (12690895-12690162)
               

               
               1-576, gnl|rn3|chr3 (17171042-17171673)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	1-576, gnl\|bosTau2\|chr11 (75590013-75590593)
	1-576, gnl\|canFam2\|chr9 (63102328-63101571)
	1-576, gnl\|dasNov1\|scaffold_18656 (44284-44987)
	1-576, gnl\|hg17\|chr9 (122878130-122878868)
	1-576, gnl\|Hg17\|chr9 (122878212-122878773)
	1-576, gnl\|loxAfr1\|scaffold_29831 (16990-16222)
	1-576, gnl\|mm7\|chr2 (37526441-37526989)
	1-576, gnl\|monDom2\|scaffold_38 (16561343-16562226)
	1-576, gnl\|oryCun1\|scaffold_173090 (2131-2857)
	1-576, gnl\|panTro1\|chr11 (107583238-107583974)
	1-576, gnl\|rheMac2\|chr15 (12690895-12690162)
	1-576, gnl\|rn3\|chr3 (17171042-17171673)