Ss1.1-rplac_13884.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGACTTCAAGGACCGCGTGGACCACGTGATCGACGTGTGCTTCCAGAGGAACGAGAAG TTCATCAACCTGATGAAGGAGTCCTTCGAGGCGTTCATCAACAAGCGGCCCAACAAGCCC GCCGAGCTGATCGCAAAGCACGTTGACTCAAAACTGAGAGCGGGTAATAAAGAGGCCACG GACGAGGAGCTGGAGAGGATTCTGGACAAGGTCATGATCATATTCAGGTTCATCCACGGT AAAGACGTCTTTGAAGCATTTTATAAAAAAGATTTGGCCAAAAGACTCCTCGTTGGAAAA AGTGCCTCTGTCGATGCCGAGAAGTCGATGCTGTCGAAACTGAAGCACGAGTGCGGCGCG GCCTTCACCAGCAAGCTGGAGGGCATGTTCAAGGACATGGAGCTGTCCAAGGACATCATG GTCCACTTCAAGCAGTACATGCAGAACCAGAGCGACCCGGGCTCTATAGACCTGACGGTG AATATTCTCACGATGGGGTACTGGCCGACCTACACACCCATGGATGTGCATTTAACTCCA GAGATGGTTAAACTCCAGGAAGTGTTCAAGACCTTTTACCTGGGAAAGCACAGCGGCCGC AAACTTCAGTGGCAGACGGCCCTGGGGCACGCCGTGTTAAAAGCGGAGTTTAAAGAAGGG AAGAAGGAGTTCCAGGTGTCGCTCTTCCAGACGCTGGTGCTGCTCATGTTCAACGAGGGC GACGGCTTCGGCTTCGAGGAGATAAAGGCGGCCACCGGCATAGAGGACAGCGAGCTGCGG AGGACCTTGCAGTCCTTGGCCTGCGGCAAAGCTCGGGTTCTGATCAAGAGTCCCAAAGGG AAGGAGGTGGAAGACGGAGACAAGTTCTTTTTCAACGGGGACTTCAAGCACAAGTTGTTC CGGATAAAGATCAATCAGATTCAGATGAAGGAGACCGTGGAGGAGCAGGTGAGCACCACG GAGCGCGTGTTCCAGGACCGGCAGTACCAGATCGACGCCGCCATCGTCAGGATCATGAAG ATGCGCAAGACGCTGGGCCACAACCTGCTGGTCTCCGAGCTGTACAACCAGCTGAAGTTC CCGGTCAAGCCCGGAGATTTGAAGAAGAGGATCGAGTCCCTCATCGACAGAGACTACATG GAGCGGGACAAGGACAGTCCGAACCAGTACCACTACGTGGCCTGAGGCCCGGCGGCGCCG CCGTGCGACGCGAGAATGTATCTTCAGGGCAGAGACACTCGGTGCTGTTGCCAGGGCTTT CTGGGCCTGGACAGCACGGCTGCTTTGGGACTGGAAGGAGGGGGGATTCCGGGACCGCCC TTCGCAGGCTCAAGGGCTTGCATAGGGCGCGTGCGTCTTGCCTGCAGTTCTTCCTCCTGC TCTTTTAGGCGTTTTAAGTGCGGAGTGACCCTGACGGCTTCTCTGTGAGGTGGTGTTCTT GCGGCAGCGCCGAGCGTTGGGCGTGTGTGTGTGTGGCCTGCATGTGCGGGGGGCAGACCC CGCATGCTGCCTCCTGCAGCCACGGGCCACCGGGTGTCCTGCAGACATGCCGCCCGCGCT GGCGAGCACTTAGGCGACCGCGGGACCCTCAACTGGTAAACGTTAGGGAGGAACAGTCAG TGTTAAAAACTGGCTAATGATTATGCAACCCGAATGCTAGCACCTGTTTGTTTCGTTTCT TTTCAAAAAGTTTTCAACTTTGATGACCGATTTCTTTTACGATGAGGTTTCTCGGTGAGA TCTCCGCTGTGCCAAGAGGACCTTGTGTCTGACGTGTGTGATGCCGCGAGCGCGTCAGCG TCTTCGCTGTATTTCTGCTAAGTTACTTGGGAATCCCTGTTGGAGGGTGGCAGGGGTGGT GTGTGTGTGCTCTTCTCCGATTGAGTCTCGCGGGCCCCGGCTCCCACGCCGGGGTGACTG CCGTGTGAGTTTTTTCTAACTGCAGGATTGGTGAGAGTGCGACAGTCAAGTTTGGTTTTG CTTCCTCGGGCCGGGCGGGGCGGCTGTTCTCTGCTGTAACCACGGAGGACAGGGGCCCTC GGGACGTGGGGTCTGGGGGTTCACGCTGTGTGCGTGGGGCAAGGCGGACGGGCGGCGGCA GCGTGGTGACGAGGACAGAGATACTGCTGTGGGAGCGTTGAGAAGGTCTTTATGTTTCAC ATGATAGCACGTTTCACTTTGATTAAAAGCTGCCAAAGGAGTTTTGATCATGGTGTAAGT GTCGAAAGCAATATTTTCTGGAACATCTACCAAGTTTATATCATTTGACTTTTGTGCTAA ATTATTAAAAGATTCTCCCTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGACTTCAAGGACCGCGTGGACCACGTGATCGACGTGTGCTTCCAGAGGAACGAGAAG TTCATCAACCTGATGAAGGAGTCCTTCGAGGCGTTCATCAACAAGCGGCCCAACAAGCCC GCCGAGCTGATCGCAAAGCACGTTGACTCAAAACTGAGAGCGGGTAATAAAGAGGCCACG GACGAGGAGCTGGAGAGGATTCTGGACAAGGTCATGATCATATTCAGGTTCATCCACGGT AAAGACGTCTTTGAAGCATTTTATAAAAAAGATTTGGCCAAAAGACTCCTCGTTGGAAAA AGTGCCTCTGTCGATGCCGAGAAGTCGATGCTGTCGAAACTGAAGCACGAGTGCGGCGCG GCCTTCACCAGCAAGCTGGAGGGCATGTTCAAGGACATGGAGCTGTCCAAGGACATCATG GTCCACTTCAAGCAGTACATGCAGAACCAGAGCGACCCGGGCTCTATAGACCTGACGGTG AATATTCTCACGATGGGGTACTGGCCGACCTACACACCCATGGATGTGCATTTAACTCCA GAGATGGTTAAACTCCAGGAAGTGTTCAAGACCTTTTACCTGGGAAAGCACAGCGGCCGC AAACTTCAGTGGCAGACGGCCCTGGGGCACGCCGTGTTAAAAGCGGAGTTTAAAGAAGGG AAGAAGGAGTTCCAGGTGTCGCTCTTCCAGACGCTGGTGCTGCTCATGTTCAACGAGGGC GACGGCTTCGGCTTCGAGGAGATAAAGGCGGCCACCGGCATAGAGGACAGCGAGCTGCGG AGGACCTTGCAGTCCTTGGCCTGCGGCAAAGCTCGGGTTCTGATCAAGAGTCCCAAAGGG AAGGAGGTGGAAGACGGAGACAAGTTCTTTTTCAACGGGGACTTCAAGCACAAGTTGTTC CGGATAAAGATCAATCAGATTCAGATGAAGGAGACCGTGGAGGAGCAGGTGAGCACCACG GAGCGCGTGTTCCAGGACCGGCAGTACCAGATCGACGCCGCCATCGTCAGGATCATGAAG ATGCGCAAGACGCTGGGCCACAACCTGCTGGTCTCCGAGCTGTACAACCAGCTGAAGTTC CCGGTCAAGCCCGGAGATTTGAAGAAGAGGATCGAGTCCCTCATCGACAGAGACTACATG GAGCGGGACAAGGACAGTCCGAACCAGTACCACTACGTGGCCTGAGGCCCGGCGGCGCCG CCGTGCGACGCGAGAATGTATCTTCAGGGCAGAGACACTCGGTGCTGTTGCCAGGGCTTT CTGGGCCTGGACAGCACGGCTGCTTTGGGACTGGAAGGAGGGGGGATTCCGGGACCGCCC TTCGCAGGCTCAAGGGCTTGCATAGGGCGCGTGCGTCTTGCCTGCAGTTCTTCCTCCTGC TCTTTTAGGCGTTTTAAGTGCGGAGTGACCCTGACGGCTTCTCTGTGAGGTGGTGTTCTT GCGGCAGCGCCGAGCGTTGGGCGTGTGTGTGTGTGGCCTGCATGTGCGGGGGGCAGACCC CGCATGCTGCCTCCTGCAGCCACGGGCCACCGGGTGTCCTGCAGACATGCCGCCCGCGCT GGCGAGCACTTAGGCGACCGCGGGACCCTCAACTGGTAAACGTTAGGGAGGAACAGTCAG TGTTAAAAACTGGCTAATGATTATGCAACCCGAATGCTAGCACCTGTTTGTTTCGTTTCT TTTCAAAAAGTTTTCAACTTTGATGACCGATTTCTTTTACGATGAGGTTTCTCGGTGAGA TCTCCGCTGTGCCAAGAGGACCTTGTGTCTGACGTGTGTGATGCCGCGAGCGCGTCAGCG TCTTCGCTGTATTTCTGCTAAGTTACTTGGGAATCCCTGTTGGAGGGTGGCAGGGGTGGT GTGTGTGTGCTCTTCTCCGATTGAGTCTCGCGGGCCCCGGCTCCCACGCCGGGGTGACTG CCGTGTGAGTTTTTTCTAACTGCAGGATTGGTGAGAGTGCGACAGTCAAGTTTGGTTTTG CTTCCTCGGGCCGGGCGGGGCGGCTGTTCTCTGCTGTAACCACGGAGGACAGGGGCCCTC GGGACGTGGGGTCTGGGGGTTCACGCTGTGTGCGTGGGGCAAGGCGGACGGGCGGCGGCA GCGTGGTGACGAGGACAGAGATACTGCTGTGGGAGCGTTGAGAAGGTCTTTATGTTTCAC ATGATAGCACGTTTCACTTTGATTAAAAGCTGCCAAAGGAGTTTTGATCATGGTGTAAGT GTCGAAAGCAATATTTTCTGGAACATCTACCAAGTTTATATCATTTGACTTTTGTGCTAA ATTATTAAAAGATTCTCCCTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-131, gnl|bosTau2|chr12 (46780196-46780066) | |
| 1-131, gnl|Hg17|chr13 (112945343-112945473) | |
| 1-131, gnl|Mm7|chr8 (13107929-13108059) | |
| 238-349, gnl|bosTau2|chr12 (46778563-46778452) | |
| 238-349, gnl|canFam2|chr22 (63613097-63613215) | |
| 238-349, gnl|canFam2|chr22 (63613208-63613105) | |
| 238-349, gnl|danRer3|chr20 (25952705-25952587) | |
| 238-349, gnl|danRer3|chrNA (73396221-73396380) | |
| 238-349, gnl|dasNov1|scaffold_3287 (54543-54425) | |
| 238-349, gnl|echTel1|scaffold_35496 (259-377) | |
| 238-349, gnl|echTel1|scaffold_35496 (370-267) | |
| 238-349, gnl|fr1|chrUn (163029492-163029374) | |
| 238-349, gnl|fr1|chrUn (289668635-289668771) | |
| 238-349, gnl|galGal2|chr1 (130528962-130528844) | |
| 238-349, gnl|hg17|chr13 (112947263-112947381) | |
| 238-349, gnl|Hg17|chr13 (112947263-112947374) | |
| 238-349, gnl|hg17|chr4 (117706076-117706183) | |
| 238-349, gnl|loxAfr1|scaffold_93923 (4862-4980) | |
| 238-349, gnl|loxAfr1|scaffold_93923 (4973-4870) | |
| 238-349, gnl|mm7|chr6 (140101760-140101858) | |
| 238-349, gnl|mm7|chr8 (13110352-13110470) | |
| 238-349, gnl|Mm7|chr8 (13110352-13110463) | |
| 238-349, gnl|monDom2|scaffold_11 (32155964-32155846) | |
| 238-349, gnl|monDom2|scaffold_184 (510827-510730) | |
| 238-349, gnl|oryCun1|scaffold_145823 (10096-9995) | |
| 238-349, gnl|oryCun1|scaffold_169242 (16986-16881) | |
| 238-349, gnl|panTro1|chr14_random (2866181-2866299) | |
| 238-349, gnl|panTro1|chr3 (134363899-134364006) | |
| 238-349, gnl|rheMac2|chr17 (93367374-93367492) | |
| 238-349, gnl|rheMac2|chr5 (109297978-109298086) | |
| 238-349, gnl|rn3|chr16 (81253864-81253746) | |
| 238-349, gnl|rn3|chr16 (81253753-81253858) | |
| 238-349, gnl|tetNig1|chr1 (4216921-4216755) | |
| 238-349, gnl|tetNig1|chr5 (8302380-8302262) | |
| 238-349, gnl|xenTro1|scaffold_563 (781786-781903) | |
| 432-546, gnl|bosTau2|chr12 (46777741-46777627) | |
| 432-546, gnl|canFam2|chr22 (63613802-63613696) | |
| 432-546, gnl|danRer3|chrNA (73395891-73396018) | |
| 432-546, gnl|echTel1|scaffold_35496 (1996-1892) | |
| 432-546, gnl|fr1|chrUn (289668267-289668430) | |
| 432-546, gnl|Hg17|chr13 (112948268-112948381) | |
| 432-546, gnl|hg17|chr4 (117705881-117705987) | |
| 432-546, gnl|loxAfr1|scaffold_200014 (519-623) | |
| 432-546, gnl|mm7|chr6 (140101493-140101598) | |
| 432-546, gnl|Mm7|chr8 (13111012-13111126) | |
| 432-546, gnl|monDom2|scaffold_184 (511022-510916) | |
| 432-546, gnl|oryCun1|scaffold_145823 (10291-10185) | |
| 432-546, gnl|panTro1|chr3 (134363704-134363810) | |
| 432-546, gnl|rheMac2|chr5 (109297782-109297889) | |
| 432-546, gnl|rn3|chr16 (81253010-81253116) | |
| 432-546, gnl|tetNig1|chr1 (4217235-4217079) | |
| 658-938, gnl|bosTau2|chr12 (46775379-46775099) | |
| 658-938, gnl|Hg17|chr13 (112957008-112957442) | |
| 658-938, gnl|Mm7|chr8 (13116713-13117353) | |
| 1085-1394, gnl|bosTau2|chr12 (46772073-46771777) | |
| 1085-1394, gnl|Hg17|chr13 (112965797-112966116) | |
| 1085-1394, gnl|Mm7|chr8 (13120747-13121064) | |
| 1799-2308, gnl|bosTau2|chr12 (46771401-46770875) | |
| 1799-2308, gnl|Hg17|chr13 (112966545-112967126) | |
| 1799-2308, gnl|Mm7|chr8 (13121397-13121924) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-131, gnl|bosTau2|chr12 (46780196-46780066) | |
| 1-131, gnl|Hg17|chr13 (112945343-112945473) | |
| 1-131, gnl|Mm7|chr8 (13107929-13108059) | |
| 238-349, gnl|bosTau2|chr12 (46778563-46778452) | |
| 238-349, gnl|canFam2|chr22 (63613097-63613215) | |
| 238-349, gnl|canFam2|chr22 (63613208-63613105) | |
| 238-349, gnl|danRer3|chr20 (25952705-25952587) | |
| 238-349, gnl|danRer3|chrNA (73396221-73396380) | |
| 238-349, gnl|dasNov1|scaffold_3287 (54543-54425) | |
| 238-349, gnl|echTel1|scaffold_35496 (259-377) | |
| 238-349, gnl|echTel1|scaffold_35496 (370-267) | |
| 238-349, gnl|fr1|chrUn (163029492-163029374) | |
| 238-349, gnl|fr1|chrUn (289668635-289668771) | |
| 238-349, gnl|galGal2|chr1 (130528962-130528844) | |
| 238-349, gnl|hg17|chr13 (112947263-112947381) | |
| 238-349, gnl|Hg17|chr13 (112947263-112947374) | |
| 238-349, gnl|hg17|chr4 (117706076-117706183) | |
| 238-349, gnl|loxAfr1|scaffold_93923 (4862-4980) | |
| 238-349, gnl|loxAfr1|scaffold_93923 (4973-4870) | |
| 238-349, gnl|mm7|chr6 (140101760-140101858) | |
| 238-349, gnl|mm7|chr8 (13110352-13110470) | |
| 238-349, gnl|Mm7|chr8 (13110352-13110463) | |
| 238-349, gnl|monDom2|scaffold_11 (32155964-32155846) | |
| 238-349, gnl|monDom2|scaffold_184 (510827-510730) | |
| 238-349, gnl|oryCun1|scaffold_145823 (10096-9995) | |
| 238-349, gnl|oryCun1|scaffold_169242 (16986-16881) | |
| 238-349, gnl|panTro1|chr14_random (2866181-2866299) | |
| 238-349, gnl|panTro1|chr3 (134363899-134364006) | |
| 238-349, gnl|rheMac2|chr17 (93367374-93367492) | |
| 238-349, gnl|rheMac2|chr5 (109297978-109298086) | |
| 238-349, gnl|rn3|chr16 (81253864-81253746) | |
| 238-349, gnl|rn3|chr16 (81253753-81253858) | |
| 238-349, gnl|tetNig1|chr1 (4216921-4216755) | |
| 238-349, gnl|tetNig1|chr5 (8302380-8302262) | |
| 238-349, gnl|xenTro1|scaffold_563 (781786-781903) | |
| 432-546, gnl|bosTau2|chr12 (46777741-46777627) | |
| 432-546, gnl|canFam2|chr22 (63613802-63613696) | |
| 432-546, gnl|danRer3|chrNA (73395891-73396018) | |
| 432-546, gnl|echTel1|scaffold_35496 (1996-1892) | |
| 432-546, gnl|fr1|chrUn (289668267-289668430) | |
| 432-546, gnl|Hg17|chr13 (112948268-112948381) | |
| 432-546, gnl|hg17|chr4 (117705881-117705987) | |
| 432-546, gnl|loxAfr1|scaffold_200014 (519-623) | |
| 432-546, gnl|mm7|chr6 (140101493-140101598) | |
| 432-546, gnl|Mm7|chr8 (13111012-13111126) | |
| 432-546, gnl|monDom2|scaffold_184 (511022-510916) | |
| 432-546, gnl|oryCun1|scaffold_145823 (10291-10185) | |
| 432-546, gnl|panTro1|chr3 (134363704-134363810) | |
| 432-546, gnl|rheMac2|chr5 (109297782-109297889) | |
| 432-546, gnl|rn3|chr16 (81253010-81253116) | |
| 432-546, gnl|tetNig1|chr1 (4217235-4217079) | |
| 658-938, gnl|bosTau2|chr12 (46775379-46775099) | |
| 658-938, gnl|Hg17|chr13 (112957008-112957442) | |
| 658-938, gnl|Mm7|chr8 (13116713-13117353) | |
| 1085-1394, gnl|bosTau2|chr12 (46772073-46771777) | |
| 1085-1394, gnl|Hg17|chr13 (112965797-112966116) | |
| 1085-1394, gnl|Mm7|chr8 (13120747-13121064) | |
| 1799-2308, gnl|bosTau2|chr12 (46771401-46770875) | |
| 1799-2308, gnl|Hg17|chr13 (112966545-112967126) | |
| 1799-2308, gnl|Mm7|chr8 (13121397-13121924) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cte (0.58548) | |
| csk (0.422238) | |
| pla (0.401016) | |
| cje (0.330469) | |
| cki (0.330469) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ton (0.1755) | |
| cut (0.169924) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| csk (0.422238) | |
| pla (0.401016) | |
| cje (0.330469) | |
| cki (0.330469) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ton (0.1755) | |
| cut (0.169924) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| med (0.116252) | |
| nbm (0.0993246) |