Non-Coding RNA Search

Ss1.1-rplac_13922.5

Sequence:


               
               ACTCTGACCAGCAACACAATCTACAGGAACATTCAAGCACTCCTGTGTGATATGTACATA
TTCAAACACATTTTTTAACTTTTTTAAATTTTGATGTGAAGTTATAGTTTTATAACTGGC
TTAAGTTAAGTTTTATTGGAGAAATCTTGCCTATAATTCTATAAAGAGAAATGACATTCC
ACAAATGTCAAGCATATCTTTTTTACACAGATTATGCAAAGTTAAGAGTTGTATCTTATC
CCGTTAGTACAGTATGTAATAGTGGGTCTGCTGCTACTTTCTGTTTTAAGGTGTGAGGTA
ACAATTCAATCTCTTCTTCAAATCAAAATGAGGATTCTCTGGAATAACAGATTCTTATTT
GGTAAATTATTCACTTCCTTTAAATTTATCTTGCCCTGTCTCTTGCCATATTTGCTGTTT
TTATGATAGAAGATCAGATTTATGGTTTAGTACTGGTGCTTTTATGGCACATATCCAATT
TCTACAGTTAAAATGGCATACATAGGTTGCAGGAAGGAGACTTTCCTGCATCTTATACAT
GGGCTTGTCAGTTACTTAGTTGCAACCATAAAGAACAGGTAGTTTTTAAGGAATTCAGTG
ACTCTTTGGTTTCTTTAACAAAAGAGAAAGCACAGCACTTTCTGATCCAAACTCTTTTTT
TGTATCTGTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCTGACCAGCAACACAATCTACAGGAACATTCAAGCACTCCTGTGTGATATGTACATA
TTCAAACACATTTTTTAACTTTTTTAAATTTTGATGTGAAGTTATAGTTTTATAACTGGC
TTAAGTTAAGTTTTATTGGAGAAATCTTGCCTATAATTCTATAAAGAGAAATGACATTCC
ACAAATGTCAAGCATATCTTTTTTACACAGATTATGCAAAGTTAAGAGTTGTATCTTATC
CCGTTAGTACAGTATGTAATAGTGGGTCTGCTGCTACTTTCTGTTTTAAGGTGTGAGGTA
ACAATTCAATCTCTTCTTCAAATCAAAATGAGGATTCTCTGGAATAACAGATTCTTATTT
GGTAAATTATTCACTTCCTTTAAATTTATCTTGCCCTGTCTCTTGCCATATTTGCTGTTT
TTATGATAGAAGATCAGATTTATGGTTTAGTACTGGTGCTTTTATGGCACATATCCAATT
TCTACAGTTAAAATGGCATACATAGGTTGCAGGAAGGAGACTTTCCTGCATCTTATACAT
GGGCTTGTCAGTTACTTAGTTGCAACCATAAAGAACAGGTAGTTTTTAAGGAATTCAGTG
ACTCTTTGGTTTCTTTAACAAAAGAGAAAGCACAGCACTTTCTGATCCAAACTCTTTTTT
TGTATCTGTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               399-558, + strand, RNAz p=0.974591

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-558, + strand, RNAz p=0.974591

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK002082, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK002082, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-670, gnl|bosTau2|chr3 (24519194-24519855)
               

               
               1-670, gnl|Hg17|chr1 (114020693-114020038)
               

               
               1-670, gnl|Mm7|chr3 (103756547-103757183)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-670, gnl|bosTau2|chr3 (24519194-24519855)
               

               
               1-670, gnl|Hg17|chr1 (114020693-114020038)
               

               
               1-670, gnl|Mm7|chr3 (103756547-103757183)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	1-670, gnl\|bosTau2\|chr3 (24519194-24519855)
	1-670, gnl\|Hg17\|chr1 (114020693-114020038)
	1-670, gnl\|Mm7\|chr3 (103756547-103757183)