Non-Coding RNA Search

Ss1.1-rplac_1424.5

Sequence:


               
               CAAGTCCAAATTATGCCAATTAGGACGTGACTAGATATGGTGGCCCACTCATCAGATATT
AGGATTCAGACATGATTGAGATAAGGATCTGACAGTCATGTTACATGGAAACCACTTTAG
ATTGCTACCAGTTTGGTTAAGACTTTAATAATTGCATGGTCTATAAGATCTATTATGTCA
TTTCTTTAACATTTTTAAAGTGTAGGGAGCTTCTTGAGGCTGAAGAAAAGAAGGAAGTGG
CAAAGAGTAGATTGTGATTGCTTTTTGTTCTTGGAAATGCTATTTCCCACCCTCCCCCTG
TCCTTGGCGAAGGTTAGCAGATTTGGAAATTGAACATTGTCATTTCGTTTTTAACTAAAA
TGTGCAACAACATGTTGCAGTTTCCTCAAGCTGATTTCGCAGTGGTCATCAAAGTCATTC
TCAGGGCAAGAAAAGGATGTACATAAGCTGCCTCAGTTTCTGCTTCATTGCTAAGTTTTT
GAAGAGTGTTGGAATGCTCTCAAGAGTATGGCTGTAAGGAGATTTTGAATGAAGTCTTAA
AGATAAGCGAGCTAATCTGTATGCATCTAGAAATTCTGCAGCTGTAAGGAGATTTTGAAT
GAAGTCTTAAAGATAAGCGAGCTAATCTATATGCATCTAGAAATTCTGTAGCTGATCCCT
CATGATATACGGTAGTGAAAGATCCAGCAATTTACCTAATTAGCCAATGCATGGAGCCAA
ACCCCACCATTCTGAAGAATGTGTGCTTACTTGATATGGTAGCAGAGAGAAAACAAGTAG
TTTGAGGAAGTAATTTTTTTTTTTTTTAATGTATTTTTTCGGCCACTCCTGCACCATGCA
GAAGTTCAAAGGAGGGATCAAACCCTCACCACATCAGTGACAGCATTGCATCCTTAACCC
AATAGGCCATCAGGGAACTCCCAAGGAAGTAGGTTTTAAATCAGAGTTTATAAACAGCAA
TGGGAGGGATTCAGCTTAACTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTCCAAATTATGCCAATTAGGACGTGACTAGATATGGTGGCCCACTCATCAGATATT
AGGATTCAGACATGATTGAGATAAGGATCTGACAGTCATGTTACATGGAAACCACTTTAG
ATTGCTACCAGTTTGGTTAAGACTTTAATAATTGCATGGTCTATAAGATCTATTATGTCA
TTTCTTTAACATTTTTAAAGTGTAGGGAGCTTCTTGAGGCTGAAGAAAAGAAGGAAGTGG
CAAAGAGTAGATTGTGATTGCTTTTTGTTCTTGGAAATGCTATTTCCCACCCTCCCCCTG
TCCTTGGCGAAGGTTAGCAGATTTGGAAATTGAACATTGTCATTTCGTTTTTAACTAAAA
TGTGCAACAACATGTTGCAGTTTCCTCAAGCTGATTTCGCAGTGGTCATCAAAGTCATTC
TCAGGGCAAGAAAAGGATGTACATAAGCTGCCTCAGTTTCTGCTTCATTGCTAAGTTTTT
GAAGAGTGTTGGAATGCTCTCAAGAGTATGGCTGTAAGGAGATTTTGAATGAAGTCTTAA
AGATAAGCGAGCTAATCTGTATGCATCTAGAAATTCTGCAGCTGTAAGGAGATTTTGAAT
GAAGTCTTAAAGATAAGCGAGCTAATCTATATGCATCTAGAAATTCTGTAGCTGATCCCT
CATGATATACGGTAGTGAAAGATCCAGCAATTTACCTAATTAGCCAATGCATGGAGCCAA
ACCCCACCATTCTGAAGAATGTGTGCTTACTTGATATGGTAGCAGAGAGAAAACAAGTAG
TTTGAGGAAGTAATTTTTTTTTTTTTTAATGTATTTTTTCGGCCACTCCTGCACCATGCA
GAAGTTCAAAGGAGGGATCAAACCCTCACCACATCAGTGACAGCATTGCATCCTTAACCC
AATAGGCCATCAGGGAACTCCCAAGGAAGTAGGTTTTAAATCAGAGTTTATAAACAGCAA
TGGGAGGGATTCAGCTTAACTATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               412-530, + strand, RNAz p=0.593958

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               412-530, + strand, RNAz p=0.593958

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-584, gnl|bosTau2|chr5 (52091462-52092046)
               

               
               1-584, gnl|Hg17|chr12 (24856796-24856238)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-584, gnl|bosTau2|chr5 (52091462-52092046)
               

               
               1-584, gnl|Hg17|chr12 (24856796-24856238)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               pla (0.267344)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	1-584, gnl\|bosTau2\|chr5 (52091462-52092046)
	1-584, gnl\|Hg17\|chr12 (24856796-24856238)

	pla (0.267344)
	fco (0.157208)
	hyp (0.142837)
	kid (0.129735)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	med (0.116252)