Non-Coding RNA Search

Ss1.1-rplac_14854.5

Sequence:


               
               AGAAGCTAATCCAGCAGAGGGCATCCATGGGGCTCGGGCAGTTCACTGTGTGTGTTTGTG
TTTCTCAGCTCATACTCCACAGTTTGACCTGCTATGAGGAGCTGGTGACTTTTCTTCAGC
AGAGCATCCATCAGTTTGAAACAGGCCCCTATGGATGTGTCCTGCTTACCCTGTCGGCCA
TCCTGTCCAGGTCCACAGAACTGGTCCGCCAGGACTTTGATGTCCCCACCAGCCACCTGA
TTGGATCACATGGATATTGCACGCAGGAACTTGTCAATCTGCTCCTGACGGGGAAAGCCG
TGTCCAATGTTTTCAATGATGTGGTCGAGCTGGACTCTGGCGACGGGAACATCACGCTCC
TCAAAGGCATCGCCACGCGCAGCGACATTGGCTTCCTGTCTCTCTTTGAACATTATAACG
TGTGCCAGGTCGGCTGCTTCCTGAAGACCCCGAGGTTCCCCATCTGGGTGGTGTGCAGTG
AGAGCCACTTCAGCGTCCTCTTCAGCCTGCAGCTGGAGCTCCTGCGAGACTGGAGGACCG
AGAGGCTCTTTGACCTGTACTACTACGACGGCCTGGCCAACCAGCAGGAGCAGATCCGGC
TGACCATTGACACCACCCAGACCGTCCCTGAGGACAAAGACAACGACCTCGTCCCGCCCC
TTGAGCTCTGCATTAGAACCAAGTGGAAGGGGGCGTCGGTGAACTGGAATGGCTCAGACC
CCATCCTGTGACTCTCCACGTGGGTAAGCCCCACAGCTCCAGAGCTCATCACTGGGGGTG
ATGGCTGAATCCCAGGCGTGAAGGACAAGTCCCTCAGAAGAGTGTCACCTGCACATGGAC
CAGCACTGCTACAGAAGCATCCAGAACCTCCCTACCCCTGCCATGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCTAATCCAGCAGAGGGCATCCATGGGGCTCGGGCAGTTCACTGTGTGTGTTTGTG
TTTCTCAGCTCATACTCCACAGTTTGACCTGCTATGAGGAGCTGGTGACTTTTCTTCAGC
AGAGCATCCATCAGTTTGAAACAGGCCCCTATGGATGTGTCCTGCTTACCCTGTCGGCCA
TCCTGTCCAGGTCCACAGAACTGGTCCGCCAGGACTTTGATGTCCCCACCAGCCACCTGA
TTGGATCACATGGATATTGCACGCAGGAACTTGTCAATCTGCTCCTGACGGGGAAAGCCG
TGTCCAATGTTTTCAATGATGTGGTCGAGCTGGACTCTGGCGACGGGAACATCACGCTCC
TCAAAGGCATCGCCACGCGCAGCGACATTGGCTTCCTGTCTCTCTTTGAACATTATAACG
TGTGCCAGGTCGGCTGCTTCCTGAAGACCCCGAGGTTCCCCATCTGGGTGGTGTGCAGTG
AGAGCCACTTCAGCGTCCTCTTCAGCCTGCAGCTGGAGCTCCTGCGAGACTGGAGGACCG
AGAGGCTCTTTGACCTGTACTACTACGACGGCCTGGCCAACCAGCAGGAGCAGATCCGGC
TGACCATTGACACCACCCAGACCGTCCCTGAGGACAAAGACAACGACCTCGTCCCGCCCC
TTGAGCTCTGCATTAGAACCAAGTGGAAGGGGGCGTCGGTGAACTGGAATGGCTCAGACC
CCATCCTGTGACTCTCCACGTGGGTAAGCCCCACAGCTCCAGAGCTCATCACTGGGGGTG
ATGGCTGAATCCCAGGCGTGAAGGACAAGTCCCTCAGAAGAGTGTCACCTGCACATGGAC
CAGCACTGCTACAGAAGCATCCAGAACCTCCCTACCCCTGCCATGAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|51711985|ref|XP_485758.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|51711985|ref|XP_485758.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               464-583, + strand, RNAz p=0.535215

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-583, + strand, RNAz p=0.535215

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-134, gnl|bosTau2|chr4 (36195818-36195683)
               

               
               1-134, gnl|Hg17|chr7 (30666180-30666315)
               

               
               1-134, gnl|Mm7|chr6 (55242397-55242520)
               


               
               425-605, gnl|bosTau2|chr4 (36168695-36168515)
               

               
               425-605, gnl|Hg17|chr7 (30695032-30695212)
               

               
               425-605, gnl|Mm7|chr6 (55271521-55271701)
               


               
               683-888, gnl|bosTau2|chr4 (36155698-36155506)
               

               
               683-888, gnl|Hg17|chr7 (30704812-30705016)
               

               
               683-888, gnl|Mm7|chr6 (55281633-55281834)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr4 (36195818-36195683)
               

               
               1-134, gnl|Hg17|chr7 (30666180-30666315)
               

               
               1-134, gnl|Mm7|chr6 (55242397-55242520)
               


               
               425-605, gnl|bosTau2|chr4 (36168695-36168515)
               

               
               425-605, gnl|Hg17|chr7 (30695032-30695212)
               

               
               425-605, gnl|Mm7|chr6 (55271521-55271701)
               


               
               683-888, gnl|bosTau2|chr4 (36155698-36155506)
               

               
               683-888, gnl|Hg17|chr7 (30704812-30705016)
               

               
               683-888, gnl|Mm7|chr6 (55281633-55281834)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)

	1-134, gnl\|bosTau2\|chr4 (36195818-36195683)
	1-134, gnl\|Hg17\|chr7 (30666180-30666315)
	1-134, gnl\|Mm7\|chr6 (55242397-55242520)

	425-605, gnl\|bosTau2\|chr4 (36168695-36168515)
	425-605, gnl\|Hg17\|chr7 (30695032-30695212)
	425-605, gnl\|Mm7\|chr6 (55271521-55271701)

	683-888, gnl\|bosTau2\|chr4 (36155698-36155506)
	683-888, gnl\|Hg17\|chr7 (30704812-30705016)
	683-888, gnl\|Mm7\|chr6 (55281633-55281834)