Non-Coding RNA Search

Ss1.1-rplac_1529.5

Sequence:


               
               GAGGGGAAACAAAGCAAGAGGCTCCACCTACAGGATGTGAGGGCCCATGCTGGGTTTGTG
AGAGTCAGCAGAGGCTATAAGTCTGCAGCAAATGAATCAGAAAAGCAAAGGAGCTAAGTT
GTTAGAGCTTTGGGTGGGGGGGATGTCAAGTGTGTTCTGTTTTTCTTCGTTATTCCCACA
CTGAGGCACAGAGGAACTGACCTGAAGGGCTTTCTGTGGGAAAAGGTGAGGAAAGAAAGC
CATGAGACTTGGAAGACATTTAAAAACATAGCCCAAGGGGAGAATTGGCAAAGACTGGTT
CCCAGAGATTGTGTCCACTTTGGTTTTCATCCAGCTGTAGCCAGAGGCTCTCATAGGGTT
CTATAGCCTTCCTTGGGGTGCCTTTTAAAGGCATCTCTGTCCAACCCAAAATTGGTCAGA
TTCCAGAAGATTTCAGAGGGTGATCTAAAACCAGAGAAGACTGTAACTAGGAGGGACCCT
TGAGATAGGTGATTGCTTTTATGGAGAGGAAAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGGAAACAAAGCAAGAGGCTCCACCTACAGGATGTGAGGGCCCATGCTGGGTTTGTG
AGAGTCAGCAGAGGCTATAAGTCTGCAGCAAATGAATCAGAAAAGCAAAGGAGCTAAGTT
GTTAGAGCTTTGGGTGGGGGGGATGTCAAGTGTGTTCTGTTTTTCTTCGTTATTCCCACA
CTGAGGCACAGAGGAACTGACCTGAAGGGCTTTCTGTGGGAAAAGGTGAGGAAAGAAAGC
CATGAGACTTGGAAGACATTTAAAAACATAGCCCAAGGGGAGAATTGGCAAAGACTGGTT
CCCAGAGATTGTGTCCACTTTGGTTTTCATCCAGCTGTAGCCAGAGGCTCTCATAGGGTT
CTATAGCCTTCCTTGGGGTGCCTTTTAAAGGCATCTCTGTCCAACCCAAAATTGGTCAGA
TTCCAGAAGATTTCAGAGGGTGATCTAAAACCAGAGAAGACTGTAACTAGGAGGGACCCT
TGAGATAGGTGATTGCTTTTATGGAGAGGAAAGTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               192-386, - strand, RNAz p=0.784347

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-386, - strand, RNAz p=0.784347

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               5-386, gnl|bosTau2|chr10 (30887797-30888181)
               

               
               5-386, gnl|canFam2|chr30 (30637106-30637634)
               

               
               5-386, gnl|dasNov1|scaffold_7454 (50111-50578)
               

               
               5-386, gnl|hg17|chr15 (61126176-61126664)
               

               
               5-386, gnl|Hg17|chr15 (61126410-61126774)
               

               
               5-386, gnl|loxAfr1|scaffold_46717 (4113-4627)
               

               
               5-386, gnl|mm7|chr9 (67076872-67076321)
               

               
               5-386, gnl|Mm7|chr9 (67076616-67076221)
               

               
               5-386, gnl|panTro1|chr16 (61582126-61582614)
               

               
               5-386, gnl|rheMac2|chr7 (41432222-41432709)
               

               
               5-386, gnl|rn3|chr8 (71373259-71372755)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-386, gnl|bosTau2|chr10 (30887797-30888181)
               

               
               5-386, gnl|canFam2|chr30 (30637106-30637634)
               

               
               5-386, gnl|dasNov1|scaffold_7454 (50111-50578)
               

               
               5-386, gnl|hg17|chr15 (61126176-61126664)
               

               
               5-386, gnl|Hg17|chr15 (61126410-61126774)
               

               
               5-386, gnl|loxAfr1|scaffold_46717 (4113-4627)
               

               
               5-386, gnl|mm7|chr9 (67076872-67076321)
               

               
               5-386, gnl|Mm7|chr9 (67076616-67076221)
               

               
               5-386, gnl|panTro1|chr16 (61582126-61582614)
               

               
               5-386, gnl|rheMac2|chr7 (41432222-41432709)
               

               
               5-386, gnl|rn3|chr8 (71373259-71372755)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	5-386, gnl\|bosTau2\|chr10 (30887797-30888181)
	5-386, gnl\|canFam2\|chr30 (30637106-30637634)
	5-386, gnl\|dasNov1\|scaffold_7454 (50111-50578)
	5-386, gnl\|hg17\|chr15 (61126176-61126664)
	5-386, gnl\|Hg17\|chr15 (61126410-61126774)
	5-386, gnl\|loxAfr1\|scaffold_46717 (4113-4627)
	5-386, gnl\|mm7\|chr9 (67076872-67076321)
	5-386, gnl\|Mm7\|chr9 (67076616-67076221)
	5-386, gnl\|panTro1\|chr16 (61582126-61582614)
	5-386, gnl\|rheMac2\|chr7 (41432222-41432709)
	5-386, gnl\|rn3\|chr8 (71373259-71372755)