Non-Coding RNA Search

Ss1.1-rplac_15403.5

Sequence:


               
               GCCTTTTGCAGGTGGAATTCCCAGAGGCCCGCATCTTTGAAGAGACCCTCAACATCCTGA
TCTACGAGACTCCCCGGGGTCCAGACCCTGCCCTCCTCGAAGCCACCGGGGGTGCAGCTG
GAGGTGGCGGGGCAAGCCGAGGGGAAGATGAGGAGAACCGAGAACACCGTGTCCGCAGGA
TCCACGTCCGGCGCCACATCACCCACGACGAGCGTCCTCACGGCCAACAGATTGTCTTCA
AGGACTGAGCTTTGACCTGAGTTTTCCACCCCCGGCCACTGGGACCTGGTCCCTCTCCTC
TCCCTTTTCCTCTCCTTCCCCGACCTTTGCCCCGGCTTTGCTGGCCAAGTCGTGGGTCTT
CCTGCCATCCCTTCGTTGCATGGTACCGTTCACTTTGGCCCTCTCCCGTCCATTCCCATC
TCATTGCTAACCAGAGGGTGCATTCCAGCCCTTCCCCTCAAAGGCCTTCAGAAGGCCTGC
ATTCAGCCCCTCATCCTCGTCCTGCTCTCTTCCCTCCCCAGCTGGTTTAAAAGGATTTAG
AACTCCCCGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTTGCAGGTGGAATTCCCAGAGGCCCGCATCTTTGAAGAGACCCTCAACATCCTGA
TCTACGAGACTCCCCGGGGTCCAGACCCTGCCCTCCTCGAAGCCACCGGGGGTGCAGCTG
GAGGTGGCGGGGCAAGCCGAGGGGAAGATGAGGAGAACCGAGAACACCGTGTCCGCAGGA
TCCACGTCCGGCGCCACATCACCCACGACGAGCGTCCTCACGGCCAACAGATTGTCTTCA
AGGACTGAGCTTTGACCTGAGTTTTCCACCCCCGGCCACTGGGACCTGGTCCCTCTCCTC
TCCCTTTTCCTCTCCTTCCCCGACCTTTGCCCCGGCTTTGCTGGCCAAGTCGTGGGTCTT
CCTGCCATCCCTTCGTTGCATGGTACCGTTCACTTTGGCCCTCTCCCGTCCATTCCCATC
TCATTGCTAACCAGAGGGTGCATTCCAGCCCTTCCCCTCAAAGGCCTTCAGAAGGCCTGC
ATTCAGCCCCTCATCCTCGTCCTGCTCTCTTCCCTCCCCAGCTGGTTTAAAAGGATTTAG
AACTCCCCGTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-358, - strand, RNAz p=0.583551

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-358, - strand, RNAz p=0.583551

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr25 (24618578-24618025)
               

               
               1-552, gnl|Hg17|chr16 (29825941-29825399)
               

               
               1-552, gnl|Mm7|chr7 (123041432-123041951)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr25 (24618578-24618025)
               

               
               1-552, gnl|Hg17|chr16 (29825941-29825399)
               

               
               1-552, gnl|Mm7|chr7 (123041432-123041951)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)

	1-552, gnl\|bosTau2\|chr25 (24618578-24618025)
	1-552, gnl\|Hg17\|chr16 (29825941-29825399)
	1-552, gnl\|Mm7\|chr7 (123041432-123041951)