Non-Coding RNA Search

Ss1.1-rplac_15504.5

Sequence:


               
               CCCACCTGCAGCTGGATCCCCTTTCCTGCCCGGCCACGCGCGCACATCGCATCGAGGCCA
GGGGAGCGGGCACGCCGGTGGGACAAGACCGGGTGCTGCTGAGCTTCCGTCCAGCGCTCT
TTTGTTCTGGGATTTGACGTTTTTCTTGACCGCATGTTGGTTTTCTTTGGGGGAGGGTGT
TTGTTTTTAATTTAGTTTTGCCAGGGGGAGGGGAGGAAGAAGAGTGTTTACAAAGTTTTG
CAACCACCCACCTTCCTGTTTTCACTTTTGCAAATGTAAATTGGGTTTGGTTTTGTTGTA
TTACTTAACGGTTGTGGTTTCCTTTTCTACGGAGGATGCAACGGAGCCGCTGTAGGAGGG
TTTTACCAGCCATTTTGTACGCCCAATAATTTGTTATAATTTCCTTAGGTGGTGACAAGA
TTTGGGGGTTTGGTTTCATAATTTAAAGGTAATCAAGAGTGCACTCGGATAGGATCTTGC
ACATTCGTGTGTACTAGTGGGTGCCCGAGAGAGGAAGCACGCATGAAGCACACACAGGGT
CTCTGCGTGTGTGTGTGTTGTGTGTGTGGCAGGTGTCTGTGTGAGGACGTGGTCCGTGCC
CACCAGTTAGCCCACGGCTCCCCGTTTCAGGCCTGTGGGGAGATCCGAATCTGGGGCCAT
TTGAAAGCAAAAACAAACCACTGTCTCTGCTTCTGAAATGGGAATCAGTAACTCTTTTGC
ATTTTCTGTCCCACAAGATATGCAAAAACAATGCAATAATATTCATTTTAAAAAATACAA
TTGTGAGTTGTGTTGGCATTAAAGCTGTATTTAAAAAAACCACACAGAAATTTAAGGGAA
AAACTCAGAAGGCGTTTTGCTTCGATTTGTTCCGTGTAATGTTTTACTGCATTGATGGTG
TTTCTGCTGAAGAGACCGTTATACTTGAATTCAGGTCAGTCTCAGTATTTTACAAATATT
TTTTTAAAACTGAATTGCAATTGTGCCAAGCGAATATAATGAATTGAATTAAGTTTGTTT
TTGAATTCACTTCTTGTATATTTGCTGCATGTAAGTAAATCATTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCTGCAGCTGGATCCCCTTTCCTGCCCGGCCACGCGCGCACATCGCATCGAGGCCA
GGGGAGCGGGCACGCCGGTGGGACAAGACCGGGTGCTGCTGAGCTTCCGTCCAGCGCTCT
TTTGTTCTGGGATTTGACGTTTTTCTTGACCGCATGTTGGTTTTCTTTGGGGGAGGGTGT
TTGTTTTTAATTTAGTTTTGCCAGGGGGAGGGGAGGAAGAAGAGTGTTTACAAAGTTTTG
CAACCACCCACCTTCCTGTTTTCACTTTTGCAAATGTAAATTGGGTTTGGTTTTGTTGTA
TTACTTAACGGTTGTGGTTTCCTTTTCTACGGAGGATGCAACGGAGCCGCTGTAGGAGGG
TTTTACCAGCCATTTTGTACGCCCAATAATTTGTTATAATTTCCTTAGGTGGTGACAAGA
TTTGGGGGTTTGGTTTCATAATTTAAAGGTAATCAAGAGTGCACTCGGATAGGATCTTGC
ACATTCGTGTGTACTAGTGGGTGCCCGAGAGAGGAAGCACGCATGAAGCACACACAGGGT
CTCTGCGTGTGTGTGTGTTGTGTGTGTGGCAGGTGTCTGTGTGAGGACGTGGTCCGTGCC
CACCAGTTAGCCCACGGCTCCCCGTTTCAGGCCTGTGGGGAGATCCGAATCTGGGGCCAT
TTGAAAGCAAAAACAAACCACTGTCTCTGCTTCTGAAATGGGAATCAGTAACTCTTTTGC
ATTTTCTGTCCCACAAGATATGCAAAAACAATGCAATAATATTCATTTTAAAAAATACAA
TTGTGAGTTGTGTTGGCATTAAAGCTGTATTTAAAAAAACCACACAGAAATTTAAGGGAA
AAACTCAGAAGGCGTTTTGCTTCGATTTGTTCCGTGTAATGTTTTACTGCATTGATGGTG
TTTCTGCTGAAGAGACCGTTATACTTGAATTCAGGTCAGTCTCAGTATTTTACAAATATT
TTTTTAAAACTGAATTGCAATTGTGCCAAGCGAATATAATGAATTGAATTAAGTTTGTTT
TTGAATTCACTTCTTGTATATTTGCTGCATGTAAGTAAATCATTTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               592-775, - strand, RNAz p=0.922442

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               592-775, - strand, RNAz p=0.922442

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               709-806, - strand, RNAmicro p=0.994751

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               709-806, - strand, RNAmicro p=0.994751

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               53-450, gnl|bosTau2|chr5 (66182313-66182705)
               

               
               53-450, gnl|Hg17|chr12 (2671258-2671675)
               

               
               53-450, gnl|Mm7|chr6 (118618887-118618368)
               


               
               542-1010, gnl|bosTau2|chr5 (66182748-66183217)
               

               
               542-1010, gnl|Hg17|chr12 (2671785-2672287)
               

               
               542-1010, gnl|Mm7|chr6 (118618325-118617843)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-450, gnl|bosTau2|chr5 (66182313-66182705)
               

               
               53-450, gnl|Hg17|chr12 (2671258-2671675)
               

               
               53-450, gnl|Mm7|chr6 (118618887-118618368)
               


               
               542-1010, gnl|bosTau2|chr5 (66182748-66183217)
               

               
               542-1010, gnl|Hg17|chr12 (2671785-2672287)
               

               
               542-1010, gnl|Mm7|chr6 (118618325-118617843)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               aor (0.585823)
               

               
               pla (0.267344)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               bla (0.124347)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               pla (0.267344)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               bla (0.124347)

	53-450, gnl\|bosTau2\|chr5 (66182313-66182705)
	53-450, gnl\|Hg17\|chr12 (2671258-2671675)
	53-450, gnl\|Mm7\|chr6 (118618887-118618368)

	542-1010, gnl\|bosTau2\|chr5 (66182748-66183217)
	542-1010, gnl\|Hg17\|chr12 (2671785-2672287)
	542-1010, gnl\|Mm7\|chr6 (118618325-118617843)

	aor (0.585823)
	pla (0.267344)
	hea (0.204499)
	fcc (0.197785)
	gul (0.177588)
	mga (0.160205)
	bla (0.124347)