Ss1.1-rplac_15569.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGATCCGCAGCCGCACGGCCGCCAGGAGGGCGCTCCCAGTGAGGAGGGAAAAGGTGTG TTCACAGCCACCCAGGCGGAGGAGTGACACAGCCCGATTGGGAAATCCCTGGACACGAGA ATATAAATTCCTGCCCAACTGCTGGGCTTCCACGGAGGGCGAAGGGCCTGGCAGCCTTCC CGGGAGAGAAGCCCCAGGTGAAAGATGCAGAGCTGCAGGCTACGGGGTCTTGGACCTGAG GTCTCCCCTTCCTGTGTCCTCCTGAAGTTTTGGGGAGCAATGGCCATCTGGTCCATGTTG ACAGTGGGTGTTTCTGCCTTCGTCATTCAGCCTGAAGAACACACAGTGGCTGCAGGAAAC TGCCATTTTCGTGGCAAGCATCCCCAAACCAGGCTCAAGGTAGAAGGGGAGCCTGTGGCC ATGAGGTGTCCCCAGGTGCCATACTGGGACTCTGCCAGCGCCGGTGTCAATGTGACATGG CGTAGAAATGATTCCACGACCATCCCAGGGGAAGAAAAGACGCGAGTGTGGGTCCAGGAC GGTGCTCTCTGGATTGTGCCAGCCTTGCAGGGGGACTCCGGCACCTACATCTGCACTGTC AGAAATGCCTCTTACTGTGATGAAATGTCTGTGGAGCTTGGAGTCTTCGAGAAGACAGAA GCTTCCCTGTCTCTCATGTCATAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGATCCGCAGCCGCACGGCCGCCAGGAGGGCGCTCCCAGTGAGGAGGGAAAAGGTGTG TTCACAGCCACCCAGGCGGAGGAGTGACACAGCCCGATTGGGAAATCCCTGGACACGAGA ATATAAATTCCTGCCCAACTGCTGGGCTTCCACGGAGGGCGAAGGGCCTGGCAGCCTTCC CGGGAGAGAAGCCCCAGGTGAAAGATGCAGAGCTGCAGGCTACGGGGTCTTGGACCTGAG GTCTCCCCTTCCTGTGTCCTCCTGAAGTTTTGGGGAGCAATGGCCATCTGGTCCATGTTG ACAGTGGGTGTTTCTGCCTTCGTCATTCAGCCTGAAGAACACACAGTGGCTGCAGGAAAC TGCCATTTTCGTGGCAAGCATCCCCAAACCAGGCTCAAGGTAGAAGGGGAGCCTGTGGCC ATGAGGTGTCCCCAGGTGCCATACTGGGACTCTGCCAGCGCCGGTGTCAATGTGACATGG CGTAGAAATGATTCCACGACCATCCCAGGGGAAGAAAAGACGCGAGTGTGGGTCCAGGAC GGTGCTCTCTGGATTGTGCCAGCCTTGCAGGGGGACTCCGGCACCTACATCTGCACTGTC AGAAATGCCTCTTACTGTGATGAAATGTCTGTGGAGCTTGGAGTCTTCGAGAAGACAGAA GCTTCCCTGTCTCTCATGTCATAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 123-228, - strand, RNAz p=0.982283 | |
| 344-456, + strand, RNAz p=0.849279 | |
| 349-459, - strand, RNAz p=0.895171 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 123-228, - strand, RNAz p=0.982283 | |
| 344-456, + strand, RNAz p=0.849279 | |
| 349-459, - strand, RNAz p=0.895171 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 20-228, gnl|bosTau2|chr11 (3752566-3752356) | |
| 20-228, gnl|canFam2|chr10 (44127201-44126943) | |
| 20-228, gnl|dasNov1|scaffold_60029 (5970-5695) | |
| 20-228, gnl|echTel1|scaffold_167843 (5205-4980) | |
| 20-228, gnl|hg17|chr2 (102066755-102067022) | |
| 20-228, gnl|Hg17|chr2 (102066807-102067021) | |
| 20-228, gnl|loxAfr1|scaffold_26865 (5293-5560) | |
| 20-228, gnl|mm7|chr1 (40323488-40323753) | |
| 20-228, gnl|Mm7|chr1 (40323535-40323754) | |
| 20-228, gnl|oryCun1|scaffold_178057 (39802-40046) | |
| 20-228, gnl|panTro1|chr12 (104962749-104963016) | |
| 20-228, gnl|rheMac2|chr13 (101931780-101932047) | |
| 20-228, gnl|rn3|chr9 (39280636-39280905) | |
| 20-228, gnl|xenTro1|scaffold_1404 (42678-42473) | |
| 344-613, gnl|bosTau2|chr11 (3731576-3731304) | |
| 344-613, gnl|canFam2|chr10 (44109513-44109267) | |
| 344-613, gnl|dasNov1|scaffold_11692 (49123-48882) | |
| 344-613, gnl|hg17|chr2 (102084507-102084752) | |
| 344-613, gnl|Hg17|chr2 (102084539-102084818) | |
| 344-613, gnl|loxAfr1|scaffold_26865 (19206-19450) | |
| 344-613, gnl|mm7|chr1 (40344305-40344538) | |
| 344-613, gnl|Mm7|chr1 (40344331-40344603) | |
| 344-613, gnl|monDom2|scaffold_11 (20123581-20123814) | |
| 344-613, gnl|panTro1|chr12 (104980297-104980542) | |
| 344-613, gnl|rheMac2|chr13 (101948387-101948632) | |
| 344-613, gnl|rn3|chr9 (39301572-39301805) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-228, gnl|bosTau2|chr11 (3752566-3752356) | |
| 20-228, gnl|canFam2|chr10 (44127201-44126943) | |
| 20-228, gnl|dasNov1|scaffold_60029 (5970-5695) | |
| 20-228, gnl|echTel1|scaffold_167843 (5205-4980) | |
| 20-228, gnl|hg17|chr2 (102066755-102067022) | |
| 20-228, gnl|Hg17|chr2 (102066807-102067021) | |
| 20-228, gnl|loxAfr1|scaffold_26865 (5293-5560) | |
| 20-228, gnl|mm7|chr1 (40323488-40323753) | |
| 20-228, gnl|Mm7|chr1 (40323535-40323754) | |
| 20-228, gnl|oryCun1|scaffold_178057 (39802-40046) | |
| 20-228, gnl|panTro1|chr12 (104962749-104963016) | |
| 20-228, gnl|rheMac2|chr13 (101931780-101932047) | |
| 20-228, gnl|rn3|chr9 (39280636-39280905) | |
| 20-228, gnl|xenTro1|scaffold_1404 (42678-42473) | |
| 344-613, gnl|bosTau2|chr11 (3731576-3731304) | |
| 344-613, gnl|canFam2|chr10 (44109513-44109267) | |
| 344-613, gnl|dasNov1|scaffold_11692 (49123-48882) | |
| 344-613, gnl|hg17|chr2 (102084507-102084752) | |
| 344-613, gnl|Hg17|chr2 (102084539-102084818) | |
| 344-613, gnl|loxAfr1|scaffold_26865 (19206-19450) | |
| 344-613, gnl|mm7|chr1 (40344305-40344538) | |
| 344-613, gnl|Mm7|chr1 (40344331-40344603) | |
| 344-613, gnl|monDom2|scaffold_11 (20123581-20123814) | |
| 344-613, gnl|panTro1|chr12 (104980297-104980542) | |
| 344-613, gnl|rheMac2|chr13 (101948387-101948632) | |
| 344-613, gnl|rn3|chr9 (39301572-39301805) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cov (0.132153) |