Non-Coding RNA Search

Ss1.1-rplac_15764.5

Sequence:


               
               CAATGCAAACCTCAAGGAAATACCTAGAGATCTTCCTCCTGAGACAGTCTTATTGTATCT
GGACTCCAACCAGATCACATCCATCCCCAATGAGATTTTTAAGGACCTCCATCAACTAAG
AGTTCTCAACCTGTCCAAAAATGGCATTGAGTTTATTGATGAGCATGCCTTCAAAGGAGT
AGCTGAAACTTTGCAGACTCTGGACTTGTCTGACAACCGGATTCAAAGCGTGCACAAAAA
TGCCTTCAATAACCTGAAGGCCAGGGCCAGAATTGCTAACAACCCCTGGCACTGCGACTG
TACACTCCAGCAAGTTCTGAGGAGCATGGCGTCCAATCATGAGACAGCCCACAACGTGAT
CTGCAAGACTTCTGTGCTGGATGAGCACGCAGGGAGACCATTCCTCAATGCTGCCAATGA
CGCCGACCTTTGTAACCTCCCTAAAAAAACTACTGACTATGCCATGCTGGTCACCATGTT
TGGCTGGTTCACCATGGTCATCTCTTATGTGGTGTATTATGTGAGGCAAAATCAGGAGGA
TGCAAGAAGGCACCTTGAATACTTGAAATCCCTGCCGAGCAGGCAAAAGAAAGCAGATGA
ACCCGATGACATTAGCACTGTGGTCTAGGGTCCAAACTGACTGGCATGGAGAGAGAAATC
CGCTTGGGATTGCAGTAGAATAAGTGGTTTACTTCTCTCACCCATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGCAAACCTCAAGGAAATACCTAGAGATCTTCCTCCTGAGACAGTCTTATTGTATCT
GGACTCCAACCAGATCACATCCATCCCCAATGAGATTTTTAAGGACCTCCATCAACTAAG
AGTTCTCAACCTGTCCAAAAATGGCATTGAGTTTATTGATGAGCATGCCTTCAAAGGAGT
AGCTGAAACTTTGCAGACTCTGGACTTGTCTGACAACCGGATTCAAAGCGTGCACAAAAA
TGCCTTCAATAACCTGAAGGCCAGGGCCAGAATTGCTAACAACCCCTGGCACTGCGACTG
TACACTCCAGCAAGTTCTGAGGAGCATGGCGTCCAATCATGAGACAGCCCACAACGTGAT
CTGCAAGACTTCTGTGCTGGATGAGCACGCAGGGAGACCATTCCTCAATGCTGCCAATGA
CGCCGACCTTTGTAACCTCCCTAAAAAAACTACTGACTATGCCATGCTGGTCACCATGTT
TGGCTGGTTCACCATGGTCATCTCTTATGTGGTGTATTATGTGAGGCAAAATCAGGAGGA
TGCAAGAAGGCACCTTGAATACTTGAAATCCCTGCCGAGCAGGCAAAAGAAAGCAGATGA
ACCCGATGACATTAGCACTGTGGTCTAGGGTCCAAACTGACTGGCATGGAGAGAGAAATC
CGCTTGGGATTGCAGTAGAATAAGTGGTTTACTTCTCTCACCCATTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27674039|ref|XP_223808.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27674039|ref|XP_223808.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.552058
               

               
               160-359, - strand, RNAz p=0.99434

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.552058
               

               
               160-359, - strand, RNAz p=0.99434

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-708, gnl|bosTau2|chr27 (26169127-26169835)
               

               
               1-708, gnl|canFam2|chr23 (20345954-20345163)
               

               
               1-708, gnl|danRer3|chr16 (50361756-50362539)
               

               
               1-708, gnl|dasNov1|scaffold_7381 (46496-47285)
               

               
               1-708, gnl|echTel1|scaffold_309467 (43379-44170)
               

               
               1-708, gnl|fr1|chrUn (39827312-39826518)
               

               
               1-708, gnl|galGal2|chr2 (37331457-37332253)
               

               
               1-708, gnl|hg17|chr3 (26726165-26726956)
               

               
               1-708, gnl|Hg17|chr3 (26726320-26727032)
               

               
               1-708, gnl|loxAfr1|scaffold_41583 (2466-3257)
               

               
               1-708, gnl|mm7|chr14 (13171468-13170677)
               

               
               1-708, gnl|Mm7|chr14 (13171311-13170609)
               

               
               1-708, gnl|monDom2|scaffold_7 (82479477-82480268)
               

               
               1-708, gnl|oryCun1|scaffold_209991 (62564-63355)
               

               
               1-708, gnl|panTro1|chr2 (27663448-27664239)
               

               
               1-708, gnl|rheMac2|chr2 (169168806-169169597)
               

               
               1-708, gnl|rn3|chr15 (11524053-11524844)
               

               
               1-708, gnl|tetNig1|chrUn_random (10422300-10421518)
               

               
               1-708, gnl|xenTro1|scaffold_43 (2636365-2637165)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr27 (26169127-26169835)
               

               
               1-708, gnl|canFam2|chr23 (20345954-20345163)
               

               
               1-708, gnl|danRer3|chr16 (50361756-50362539)
               

               
               1-708, gnl|dasNov1|scaffold_7381 (46496-47285)
               

               
               1-708, gnl|echTel1|scaffold_309467 (43379-44170)
               

               
               1-708, gnl|fr1|chrUn (39827312-39826518)
               

               
               1-708, gnl|galGal2|chr2 (37331457-37332253)
               

               
               1-708, gnl|hg17|chr3 (26726165-26726956)
               

               
               1-708, gnl|Hg17|chr3 (26726320-26727032)
               

               
               1-708, gnl|loxAfr1|scaffold_41583 (2466-3257)
               

               
               1-708, gnl|mm7|chr14 (13171468-13170677)
               

               
               1-708, gnl|Mm7|chr14 (13171311-13170609)
               

               
               1-708, gnl|monDom2|scaffold_7 (82479477-82480268)
               

               
               1-708, gnl|oryCun1|scaffold_209991 (62564-63355)
               

               
               1-708, gnl|panTro1|chr2 (27663448-27664239)
               

               
               1-708, gnl|rheMac2|chr2 (169168806-169169597)
               

               
               1-708, gnl|rn3|chr15 (11524053-11524844)
               

               
               1-708, gnl|tetNig1|chrUn_random (10422300-10421518)
               

               
               1-708, gnl|xenTro1|scaffold_43 (2636365-2637165)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

	1-119, - strand, RNAz p=0.552058
	160-359, - strand, RNAz p=0.99434

	1-708, gnl\|bosTau2\|chr27 (26169127-26169835)
	1-708, gnl\|canFam2\|chr23 (20345954-20345163)
	1-708, gnl\|danRer3\|chr16 (50361756-50362539)
	1-708, gnl\|dasNov1\|scaffold_7381 (46496-47285)
	1-708, gnl\|echTel1\|scaffold_309467 (43379-44170)
	1-708, gnl\|fr1\|chrUn (39827312-39826518)
	1-708, gnl\|galGal2\|chr2 (37331457-37332253)
	1-708, gnl\|hg17\|chr3 (26726165-26726956)
	1-708, gnl\|Hg17\|chr3 (26726320-26727032)
	1-708, gnl\|loxAfr1\|scaffold_41583 (2466-3257)
	1-708, gnl\|mm7\|chr14 (13171468-13170677)
	1-708, gnl\|Mm7\|chr14 (13171311-13170609)
	1-708, gnl\|monDom2\|scaffold_7 (82479477-82480268)
	1-708, gnl\|oryCun1\|scaffold_209991 (62564-63355)
	1-708, gnl\|panTro1\|chr2 (27663448-27664239)
	1-708, gnl\|rheMac2\|chr2 (169168806-169169597)
	1-708, gnl\|rn3\|chr15 (11524053-11524844)
	1-708, gnl\|tetNig1\|chrUn_random (10422300-10421518)
	1-708, gnl\|xenTro1\|scaffold_43 (2636365-2637165)