Non-Coding RNA Search

Ss1.1-rplac_15780.5

Sequence:


               
               TTTTCAGTTACCTTACCATTCAATTCAATCTGAAATGTTTCGACTAAGTGCTAAGCTTAT
TTTTGTGGTATTAAGTTGCACTGTTTCCAGTGACTAGTCAGGCATCATGCCTGATGCTTA
TGCCTCCAGCAGGGTGTGCTGCTCAAGCCTTCGGGTACCTTCCATTGCGCGTCACCTTGG
GGAGATGGCATTGACAGTATATCATCTCAGTCTTGCTTATGAATGTCCCAAGTTGTCTGG
TAGAGAACACTCCTGAATCTTAAAGAATTTTTGAAATTCTCCATCCTGTAAGCAGAAAGT
AAAGCCAAATAACCTGGAGTTGATTGTCCTGCTTTAGCCTTGTGTTGAAGAGGCTGAAAC
TGTCTGTGGCACCCCATGCAACGATTTTAAGAATAAGGTCTGGCAGATGGGCACCTTTTC
TTGGGGGTAATGGAAGCATACTTACATGGGCTGGGAAGGCACACAGTGTAGATATTTTAG
GAGTTACCACGGATTTAAATAAATAGCCAAAGGAAGACCTCATTGCCTTCCAAGTGAAGG
TATAAATTCATACATATTAATAATCTGACAGTTTACCATCCTAATCGCTTTTGTTGCCTT
TCTTCACCTAAGGGTCCTTAAAGAACTCTCGGGTGAAATTACTTGTTACAGTGAGGGGGT
CTTTGGTCATTACACTGCTGTTTGTTTCTGGGACTCGCTGTCAGTGAGCAGTACCAGGGT
TGTTTTCTCTGTAACCTAGAGGTTTCACTTCACCGCAAGGAGAGAAAAGTCTCCCTATTG
CACTACAACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCAGTTACCTTACCATTCAATTCAATCTGAAATGTTTCGACTAAGTGCTAAGCTTAT
TTTTGTGGTATTAAGTTGCACTGTTTCCAGTGACTAGTCAGGCATCATGCCTGATGCTTA
TGCCTCCAGCAGGGTGTGCTGCTCAAGCCTTCGGGTACCTTCCATTGCGCGTCACCTTGG
GGAGATGGCATTGACAGTATATCATCTCAGTCTTGCTTATGAATGTCCCAAGTTGTCTGG
TAGAGAACACTCCTGAATCTTAAAGAATTTTTGAAATTCTCCATCCTGTAAGCAGAAAGT
AAAGCCAAATAACCTGGAGTTGATTGTCCTGCTTTAGCCTTGTGTTGAAGAGGCTGAAAC
TGTCTGTGGCACCCCATGCAACGATTTTAAGAATAAGGTCTGGCAGATGGGCACCTTTTC
TTGGGGGTAATGGAAGCATACTTACATGGGCTGGGAAGGCACACAGTGTAGATATTTTAG
GAGTTACCACGGATTTAAATAAATAGCCAAAGGAAGACCTCATTGCCTTCCAAGTGAAGG
TATAAATTCATACATATTAATAATCTGACAGTTTACCATCCTAATCGCTTTTGTTGCCTT
TCTTCACCTAAGGGTCCTTAAAGAACTCTCGGGTGAAATTACTTGTTACAGTGAGGGGGT
CTTTGGTCATTACACTGCTGTTTGTTTCTGGGACTCGCTGTCAGTGAGCAGTACCAGGGT
TGTTTTCTCTGTAACCTAGAGGTTTCACTTCACCGCAAGGAGAGAAAAGTCTCCCTATTG
CACTACAACAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-193, - strand, RNAz p=0.965847
               

               
               511-628, - strand, RNAz p=0.738115

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-193, - strand, RNAz p=0.965847
               

               
               511-628, - strand, RNAz p=0.738115

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-790, gnl|bosTau2|chr11 (54373377-54372621)
               

               
               1-790, gnl|canFam2|chr17 (22899788-22900766)
               

               
               1-790, gnl|dasNov1|scaffold_49638 (3475-2496)
               

               
               1-790, gnl|echTel1|scaffold_229139 (11226-10284)
               

               
               1-790, gnl|hg17|chr2 (25872789-25873756)
               

               
               1-790, gnl|Hg17|chr2 (25873790-25872987)
               

               
               1-790, gnl|loxAfr1|scaffold_17529 (39218-40211)
               

               
               1-790, gnl|mm7|chr12 (3424739-3423842)
               

               
               1-790, gnl|Mm7|chr12 (3423807-3424542)
               

               
               1-790, gnl|monDom2|scaffold_1 (151102416-151101428)
               

               
               1-790, gnl|oryCun1|scaffold_198025 (20819-19895)
               

               
               1-790, gnl|panTro1|chr12 (26777559-26778532)
               

               
               1-790, gnl|rheMac2|chr13 (25678255-25679231)
               

               
               1-790, gnl|rn3|chr6 (26487839-26486958)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-790, gnl|bosTau2|chr11 (54373377-54372621)
               

               
               1-790, gnl|canFam2|chr17 (22899788-22900766)
               

               
               1-790, gnl|dasNov1|scaffold_49638 (3475-2496)
               

               
               1-790, gnl|echTel1|scaffold_229139 (11226-10284)
               

               
               1-790, gnl|hg17|chr2 (25872789-25873756)
               

               
               1-790, gnl|Hg17|chr2 (25873790-25872987)
               

               
               1-790, gnl|loxAfr1|scaffold_17529 (39218-40211)
               

               
               1-790, gnl|mm7|chr12 (3424739-3423842)
               

               
               1-790, gnl|Mm7|chr12 (3423807-3424542)
               

               
               1-790, gnl|monDom2|scaffold_1 (151102416-151101428)
               

               
               1-790, gnl|oryCun1|scaffold_198025 (20819-19895)
               

               
               1-790, gnl|panTro1|chr12 (26777559-26778532)
               

               
               1-790, gnl|rheMac2|chr13 (25678255-25679231)
               

               
               1-790, gnl|rn3|chr6 (26487839-26486958)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.401016)
               

               
               thg (0.380373)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               thg (0.380373)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)

	1-193, - strand, RNAz p=0.965847
	511-628, - strand, RNAz p=0.738115

	1-790, gnl\|bosTau2\|chr11 (54373377-54372621)
	1-790, gnl\|canFam2\|chr17 (22899788-22900766)
	1-790, gnl\|dasNov1\|scaffold_49638 (3475-2496)
	1-790, gnl\|echTel1\|scaffold_229139 (11226-10284)
	1-790, gnl\|hg17\|chr2 (25872789-25873756)
	1-790, gnl\|Hg17\|chr2 (25873790-25872987)
	1-790, gnl\|loxAfr1\|scaffold_17529 (39218-40211)
	1-790, gnl\|mm7\|chr12 (3424739-3423842)
	1-790, gnl\|Mm7\|chr12 (3423807-3424542)
	1-790, gnl\|monDom2\|scaffold_1 (151102416-151101428)
	1-790, gnl\|oryCun1\|scaffold_198025 (20819-19895)
	1-790, gnl\|panTro1\|chr12 (26777559-26778532)
	1-790, gnl\|rheMac2\|chr13 (25678255-25679231)
	1-790, gnl\|rn3\|chr6 (26487839-26486958)