Non-Coding RNA Search

Ss1.1-rplac_16085.5

Sequence:


               
               GACTACAGCACATGCCCTACCACTACTATGAGCCCAAGGGTCCGGATGAGTGTGTCACCT
ACATCCAGAATGAGCACAGCCGCAAGGGCAACCACCACCGCTTCATCACGGAGAAGAGGG
TCTTCTCGTCCTGGGCCCAGCTGTACGGAATCACCTTCTCCCACCCCTCCTGGACCTAGG
CCACCCCGCCATGGGACTCTCACAGGGGACACAGGAGCAGGGGTCTCCGCCCAGCCGCTC
GACCGAGGGCCATCTCCTGCCCAATCAAGGCTGGCCGGAGTGTCTTCTGGCCAATCAGGC
CAGAAGAGGGTGTATCCTCCAGCCATTCAGCGCCTGGGGGGAATCTCTGGGCCAATCAGG
GATTTGGGCTTCTATGTGGTTAATCAGGTGTTGAGGGTATTTCTTGTCCAGTCAGGGTCT
GAGCAGAGTCAATCAGGGTATTTCTGAGTAATCTGAGGCTGAGGTCATGTCCTTTCCCAT
GAGGCCTTGGTTAGAGCCCCAGGATGGACCCCAGATCACGTCCTGTTGGTTGGGACAGTG
GGGTCTTGTCCCAAGGAGCTGGGAACCTTGTGTTGTCCCCTCACTTCCCAGAGCCAGAAA
GAGGTTGCATGGGGGTGGGAGCTGTCTGGAGGCCAGGCTGGGGCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTACAGCACATGCCCTACCACTACTATGAGCCCAAGGGTCCGGATGAGTGTGTCACCT
ACATCCAGAATGAGCACAGCCGCAAGGGCAACCACCACCGCTTCATCACGGAGAAGAGGG
TCTTCTCGTCCTGGGCCCAGCTGTACGGAATCACCTTCTCCCACCCCTCCTGGACCTAGG
CCACCCCGCCATGGGACTCTCACAGGGGACACAGGAGCAGGGGTCTCCGCCCAGCCGCTC
GACCGAGGGCCATCTCCTGCCCAATCAAGGCTGGCCGGAGTGTCTTCTGGCCAATCAGGC
CAGAAGAGGGTGTATCCTCCAGCCATTCAGCGCCTGGGGGGAATCTCTGGGCCAATCAGG
GATTTGGGCTTCTATGTGGTTAATCAGGTGTTGAGGGTATTTCTTGTCCAGTCAGGGTCT
GAGCAGAGTCAATCAGGGTATTTCTGAGTAATCTGAGGCTGAGGTCATGTCCTTTCCCAT
GAGGCCTTGGTTAGAGCCCCAGGATGGACCCCAGATCACGTCCTGTTGGTTGGGACAGTG
GGGTCTTGTCCCAAGGAGCTGGGAACCTTGTGTTGTCCCCTCACTTCCCAGAGCCAGAAA
GAGGTTGCATGGGGGTGGGAGCTGTCTGGAGGCCAGGCTGGGGCATTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               240-347, - strand, RNAz p=0.988666
               

               
               426-621, - strand, RNAz p=0.994385

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-347, - strand, RNAz p=0.988666
               

               
               426-621, - strand, RNAz p=0.994385

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               140-286, - strand, RNAmicro p=0.965997

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               140-286, - strand, RNAmicro p=0.965997

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-621, gnl|bosTau2|chr22 (11410218-11409633)
               

               
               3-621, gnl|Hg17|chr9 (127728608-127727969)
               

               
               3-621, gnl|Mm7|chr2 (32626664-32627309)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-621, gnl|bosTau2|chr22 (11410218-11409633)
               

               
               3-621, gnl|Hg17|chr9 (127728608-127727969)
               

               
               3-621, gnl|Mm7|chr2 (32626664-32627309)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.267344)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               eep (0.122564)

	240-347, - strand, RNAz p=0.988666
	426-621, - strand, RNAz p=0.994385

	3-621, gnl\|bosTau2\|chr22 (11410218-11409633)
	3-621, gnl\|Hg17\|chr9 (127728608-127727969)
	3-621, gnl\|Mm7\|chr2 (32626664-32627309)