Ss1.1-rplac_1612.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTTTCTTATTGTGATGAAAGAATTACTGAATTAATGGGATATGAGCCAGAAGAACTTC TGGGCCGCTCAATTTATGAATATTATCATGCTTTGGACTCTGATCATCTGACCAAAACTC ATCATGATATGTTTACTAAAGGACAAGTCACCACAGGACAGTACAGGATGCTTGCCAAAA GAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACTAAGAACTCTC AACCACAGTGCATTGTATGTGTAAATTATGTCGTGAGTGGTATTATACAGCACGACTTGA TTTTCTCCCTTCAACAAACAGAATGTGTCCTCAAACCAGTTGAATCTTCAGACATGAAAA TGACTCAGCTATTTACCAAAGTTGAATCAGAAGATACAAGTAGCCTCTTTGATAAACTTA AGAAGGAACCTGATGCTTTAACTTTGTTGGCCCCAGCTGCTGGAGACACAATCATATCTT TAGATTTTGGCAGCAATGACACAGAAACTGATGATCAACAACTTGAGGAAGTTCCATTGT ATAATGATGTAATGCTCCCCTCATCCAATGAAAAAATGCAGAACATAAATTTGGCAATGT CTCCATTGCCTGCCTCTGAAACTCCAAAGCCACTTAGAAGTACTAGTGCTGACCCTGCAC TCAATCAGGAAGTTGCATTAAAGTTAGAACCAAATCCAGAGTCCCTGGAACTTTCTTTTA CCATGCCCCAGATTCAAGATCAGCCAGCTAGTCCTTCTGATGGAAGCACTAGACAGAGTT CACCTGAGCCTAACAGTCCCAGTGAATATTGTTTTGATGTGGATAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTTTCTTATTGTGATGAAAGAATTACTGAATTAATGGGATATGAGCCAGAAGAACTTC TGGGCCGCTCAATTTATGAATATTATCATGCTTTGGACTCTGATCATCTGACCAAAACTC ATCATGATATGTTTACTAAAGGACAAGTCACCACAGGACAGTACAGGATGCTTGCCAAAA GAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACTAAGAACTCTC AACCACAGTGCATTGTATGTGTAAATTATGTCGTGAGTGGTATTATACAGCACGACTTGA TTTTCTCCCTTCAACAAACAGAATGTGTCCTCAAACCAGTTGAATCTTCAGACATGAAAA TGACTCAGCTATTTACCAAAGTTGAATCAGAAGATACAAGTAGCCTCTTTGATAAACTTA AGAAGGAACCTGATGCTTTAACTTTGTTGGCCCCAGCTGCTGGAGACACAATCATATCTT TAGATTTTGGCAGCAATGACACAGAAACTGATGATCAACAACTTGAGGAAGTTCCATTGT ATAATGATGTAATGCTCCCCTCATCCAATGAAAAAATGCAGAACATAAATTTGGCAATGT CTCCATTGCCTGCCTCTGAAACTCCAAAGCCACTTAGAAGTACTAGTGCTGACCCTGCAC TCAATCAGGAAGTTGCATTAAAGTTAGAACCAAATCCAGAGTCCCTGGAACTTTCTTTTA CCATGCCCCAGATTCAAGATCAGCCAGCTAGTCCTTCTGATGGAAGCACTAGACAGAGTT CACCTGAGCCTAACAGTCCCAGTGAATATTGTTTTGATGTGGATAGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 516-675, - strand, RNAz p=0.945597 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 516-675, - strand, RNAz p=0.945597 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 21-129, gnl|bosTau2|chr10 (49795431-49795323) | |
| 21-129, gnl|canFam2|chr8 (39674081-39674235) | |
| 21-129, gnl|danRer3|chr20 (23486553-23486701) | |
| 21-129, gnl|dasNov1|scaffold_3777 (10041-9887) | |
| 21-129, gnl|echTel1|scaffold_316354 (42458-42301) | |
| 21-129, gnl|fr1|chrUn (279391829-279391695) | |
| 21-129, gnl|galGal2|chr5 (50722041-50721899) | |
| 21-129, gnl|hg17|chr14 (61268867-61269023) | |
| 21-129, gnl|Hg17|chr14 (61268887-61268995) | |
| 21-129, gnl|loxAfr1|scaffold_365 (76841-76678) | |
| 21-129, gnl|mm7|chr12 (71888918-71889053) | |
| 21-129, gnl|Mm7|chr12 (71888921-71889029) | |
| 21-129, gnl|monDom2|scaffold_8 (74653619-74653768) | |
| 21-129, gnl|oryCun1|scaffold_209450 (56640-56794) | |
| 21-129, gnl|panTro1|chr15 (60835871-60836027) | |
| 21-129, gnl|rheMac2|chr7 (124729287-124729444) | |
| 21-129, gnl|rn3|chr6 (96456942-96457094) | |
| 21-129, gnl|tetNig1|chr10 (5679678-5679813) | |
| 21-129, gnl|xenTro1|scaffold_673 (386582-386428) | |
| 130-277, gnl|bosTau2|chr10 (49794236-49794089) | |
| 130-277, gnl|canFam2|chr8 (39675710-39675864) | |
| 130-277, gnl|danRer3|chr20 (23486811-23486968) | |
| 130-277, gnl|dasNov1|scaffold_170930 (3623-3777) | |
| 130-277, gnl|echTel1|scaffold_316354 (41000-40846) | |
| 130-277, gnl|fr1|chrUn (279391588-279391431) | |
| 130-277, gnl|galGal2|chr5 (50721769-50721615) | |
| 130-277, gnl|hg17|chr14 (61270603-61270759) | |
| 130-277, gnl|Hg17|chr14 (61270609-61270756) | |
| 130-277, gnl|loxAfr1|scaffold_365 (75447-75293) | |
| 130-277, gnl|mm7|chr12 (71890380-71890534) | |
| 130-277, gnl|Mm7|chr12 (71890386-71890533) | |
| 130-277, gnl|monDom2|scaffold_8 (74654297-74654451) | |
| 130-277, gnl|oryCun1|scaffold_209450 (58218-58372) | |
| 130-277, gnl|panTro1|chr15 (60837617-60837773) | |
| 130-277, gnl|rheMac2|chr7 (124731053-124731207) | |
| 130-277, gnl|rn3|chr6 (96458226-96458380) | |
| 130-277, gnl|tetNig1|chr10 (5679897-5680049) | |
| 130-277, gnl|xenTro1|scaffold_673 (385811-385657) | |
| 483-788, gnl|bosTau2|chr10 (49791821-49791519) | |
| 483-788, gnl|Hg17|chr14 (61274536-61274844) | |
| 483-788, gnl|Mm7|chr12 (71893060-71893364) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-129, gnl|bosTau2|chr10 (49795431-49795323) | |
| 21-129, gnl|canFam2|chr8 (39674081-39674235) | |
| 21-129, gnl|danRer3|chr20 (23486553-23486701) | |
| 21-129, gnl|dasNov1|scaffold_3777 (10041-9887) | |
| 21-129, gnl|echTel1|scaffold_316354 (42458-42301) | |
| 21-129, gnl|fr1|chrUn (279391829-279391695) | |
| 21-129, gnl|galGal2|chr5 (50722041-50721899) | |
| 21-129, gnl|hg17|chr14 (61268867-61269023) | |
| 21-129, gnl|Hg17|chr14 (61268887-61268995) | |
| 21-129, gnl|loxAfr1|scaffold_365 (76841-76678) | |
| 21-129, gnl|mm7|chr12 (71888918-71889053) | |
| 21-129, gnl|Mm7|chr12 (71888921-71889029) | |
| 21-129, gnl|monDom2|scaffold_8 (74653619-74653768) | |
| 21-129, gnl|oryCun1|scaffold_209450 (56640-56794) | |
| 21-129, gnl|panTro1|chr15 (60835871-60836027) | |
| 21-129, gnl|rheMac2|chr7 (124729287-124729444) | |
| 21-129, gnl|rn3|chr6 (96456942-96457094) | |
| 21-129, gnl|tetNig1|chr10 (5679678-5679813) | |
| 21-129, gnl|xenTro1|scaffold_673 (386582-386428) | |
| 130-277, gnl|bosTau2|chr10 (49794236-49794089) | |
| 130-277, gnl|canFam2|chr8 (39675710-39675864) | |
| 130-277, gnl|danRer3|chr20 (23486811-23486968) | |
| 130-277, gnl|dasNov1|scaffold_170930 (3623-3777) | |
| 130-277, gnl|echTel1|scaffold_316354 (41000-40846) | |
| 130-277, gnl|fr1|chrUn (279391588-279391431) | |
| 130-277, gnl|galGal2|chr5 (50721769-50721615) | |
| 130-277, gnl|hg17|chr14 (61270603-61270759) | |
| 130-277, gnl|Hg17|chr14 (61270609-61270756) | |
| 130-277, gnl|loxAfr1|scaffold_365 (75447-75293) | |
| 130-277, gnl|mm7|chr12 (71890380-71890534) | |
| 130-277, gnl|Mm7|chr12 (71890386-71890533) | |
| 130-277, gnl|monDom2|scaffold_8 (74654297-74654451) | |
| 130-277, gnl|oryCun1|scaffold_209450 (58218-58372) | |
| 130-277, gnl|panTro1|chr15 (60837617-60837773) | |
| 130-277, gnl|rheMac2|chr7 (124731053-124731207) | |
| 130-277, gnl|rn3|chr6 (96458226-96458380) | |
| 130-277, gnl|tetNig1|chr10 (5679897-5680049) | |
| 130-277, gnl|xenTro1|scaffold_673 (385811-385657) | |
| 483-788, gnl|bosTau2|chr10 (49791821-49791519) | |
| 483-788, gnl|Hg17|chr14 (61274536-61274844) | |
| 483-788, gnl|Mm7|chr12 (71893060-71893364) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| pla (0.133672) | |
| ecc (0.115035) |