Non-Coding RNA Search

Ss1.1-rplac_16236.5

Sequence:


               
               CGGTCCGGAAGCTGCTGGAGACGCTGCAGGAGTGGCTGGCCAGCCTTCCGCTGGACAGGA
TCCCCTACAACGCCGTCCTCGACCTGGTCAACAACAAGATGCGGATTTCTGGCCAGTACC
TCACTCGCCGCGTCCAGTGGGTCGGATGTCAGGGAAGCCGAGCGGAGCTGAGGGGCTACC
CGTGCTCCCTCTGGAAGCTCTTCCACACTCTGACTGTCCGAGCCGGGACCCACCCGGACG
CGCTGGACGGCACAGGCTTTGCAGGCGACCCCCAGGCCGTTCTGCAGGTCATCAGGCGGT
ACGTCCGCGTCTTCTTTGGGTGTAAGGAGTGCGCCGAGCATTTTGAGGAGATGGCCGAAG
AATCGATGGACTCCGTGAGAACCGCAGACCAGGCAGTTCTCTGGCTCTGGAGGAAGCATA
ACGTGGTCAACGGCCGCTTGGCAGGCCATCCGAGTGAGGACCCCAAGTTTCCCAAGGTCC
CGTGGCCCACTCCGGACCTCTGCCCCGCCTGCCACGAGGAAATCAGGGGCCTGCCCAGCT
GGAACGAAGGCCAGGTGCTCCTGTTCTTGAAGCGGCACTACGGCAGCGACAACCTCGTGG
ACACGTACTCCGAGGACCTGGGAGGCGCCGGCGAGGGCGCCCCGGCCGAGGGCGAGGGGC
CGGAGCGGGGCCGCACTTCCCCAGAGCAGCCCCGCGGAGCCCTGGGCGCCGAGGGCCTCC
GCGTGCCCAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTCCGGAAGCTGCTGGAGACGCTGCAGGAGTGGCTGGCCAGCCTTCCGCTGGACAGGA
TCCCCTACAACGCCGTCCTCGACCTGGTCAACAACAAGATGCGGATTTCTGGCCAGTACC
TCACTCGCCGCGTCCAGTGGGTCGGATGTCAGGGAAGCCGAGCGGAGCTGAGGGGCTACC
CGTGCTCCCTCTGGAAGCTCTTCCACACTCTGACTGTCCGAGCCGGGACCCACCCGGACG
CGCTGGACGGCACAGGCTTTGCAGGCGACCCCCAGGCCGTTCTGCAGGTCATCAGGCGGT
ACGTCCGCGTCTTCTTTGGGTGTAAGGAGTGCGCCGAGCATTTTGAGGAGATGGCCGAAG
AATCGATGGACTCCGTGAGAACCGCAGACCAGGCAGTTCTCTGGCTCTGGAGGAAGCATA
ACGTGGTCAACGGCCGCTTGGCAGGCCATCCGAGTGAGGACCCCAAGTTTCCCAAGGTCC
CGTGGCCCACTCCGGACCTCTGCCCCGCCTGCCACGAGGAAATCAGGGGCCTGCCCAGCT
GGAACGAAGGCCAGGTGCTCCTGTTCTTGAAGCGGCACTACGGCAGCGACAACCTCGTGG
ACACGTACTCCGAGGACCTGGGAGGCGCCGGCGAGGGCGCCCCGGCCGAGGGCGAGGGGC
CGGAGCGGGGCCGCACTTCCCCAGAGCAGCCCCGCGGAGCCCTGGGCGCCGAGGGCCTCC
GCGTGCCCAGCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55632609|ref|XP_520361.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55632609|ref|XP_520361.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               104-297, gnl|bosTau2|chr28 (12815334-12815529)
               

               
               104-297, gnl|Hg17|chr9 (136333096-136332907)
               


               
               443-631, gnl|bosTau2|chr28 (12820701-12820889)
               

               
               443-631, gnl|Hg17|chr9 (136327068-136326880)
               

               
               443-631, gnl|Mm7|chr2 (26218772-26218584)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-297, gnl|bosTau2|chr28 (12815334-12815529)
               

               
               104-297, gnl|Hg17|chr9 (136333096-136332907)
               


               
               443-631, gnl|bosTau2|chr28 (12820701-12820889)
               

               
               443-631, gnl|Hg17|chr9 (136327068-136326880)
               

               
               443-631, gnl|Mm7|chr2 (26218772-26218584)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	104-297, gnl\|bosTau2\|chr28 (12815334-12815529)
	104-297, gnl\|Hg17\|chr9 (136333096-136332907)

	443-631, gnl\|bosTau2\|chr28 (12820701-12820889)
	443-631, gnl\|Hg17\|chr9 (136327068-136326880)
	443-631, gnl\|Mm7\|chr2 (26218772-26218584)