Non-Coding RNA Search

Ss1.1-rplac_16251.5

Sequence:


               
               CACGCCTTTGTCAGACGCTTCGGTTTCTATGAGACGCTTCCCTGAGCAGCTCTGCCCTGG
GGTCCCGAGGCTGACCCCCTGAGCTTCCTCTGGGTTTTCTGAGGAGGGGACAGACTGTCA
TCTGAAGCTGCAGCCCTATCCAGGGGCCAGTGGCTCAGACTCTGGTGTCCCCTGGTGTCC
CAGCCTCCGCGCCAGCCACTCGGGCCAGCCCTGGCCCAGGCAGCCTGAGCCGAGCTGCCA
GGGCCTCGGGAGAGCTGCACACACGTCCTCACCCCAGGCTGTGGCTGGTGGGCTGCCTCT
CATGGGCGTCCCCCAGCTCTGCCCACTCCCCCTCTCTCTCAGGCCCCAGGAGGGGAGCAA
GGAGAACGGGGGTGCCCGCAGCAAGCGGGCCCTGGAGGAGGAGGGCAGCACAGAGGCCCT
GTCCAAGAACAAGCAGAAGAAGCAGCTGAGGAACCCACACAAGACCTTTGACCCCTCGCT
GAAACGTAAGCCGCGGCACCCCCCACGGGTCCCCGGGTTCGGGTGGTGCAGATGCCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGCCTTTGTCAGACGCTTCGGTTTCTATGAGACGCTTCCCTGAGCAGCTCTGCCCTGG
GGTCCCGAGGCTGACCCCCTGAGCTTCCTCTGGGTTTTCTGAGGAGGGGACAGACTGTCA
TCTGAAGCTGCAGCCCTATCCAGGGGCCAGTGGCTCAGACTCTGGTGTCCCCTGGTGTCC
CAGCCTCCGCGCCAGCCACTCGGGCCAGCCCTGGCCCAGGCAGCCTGAGCCGAGCTGCCA
GGGCCTCGGGAGAGCTGCACACACGTCCTCACCCCAGGCTGTGGCTGGTGGGCTGCCTCT
CATGGGCGTCCCCCAGCTCTGCCCACTCCCCCTCTCTCTCAGGCCCCAGGAGGGGAGCAA
GGAGAACGGGGGTGCCCGCAGCAAGCGGGCCCTGGAGGAGGAGGGCAGCACAGAGGCCCT
GTCCAAGAACAAGCAGAAGAAGCAGCTGAGGAACCCACACAAGACCTTTGACCCCTCGCT
GAAACGTAAGCCGCGGCACCCCCCACGGGTCCCCGGGTTCGGGTGGTGCAGATGCCTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               308-417, - strand, RNAz p=0.990633

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-417, - strand, RNAz p=0.990633

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               221-501, gnl|bosTau2|chr19 (45611795-45611511)
               

               
               221-501, gnl|Hg17|chr17 (77611461-77611095)
               

               
               221-501, gnl|Mm7|chr11 (120900638-120900243)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-501, gnl|bosTau2|chr19 (45611795-45611511)
               

               
               221-501, gnl|Hg17|chr17 (77611461-77611095)
               

               
               221-501, gnl|Mm7|chr11 (120900638-120900243)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               pla (0.133672)

	221-501, gnl\|bosTau2\|chr19 (45611795-45611511)
	221-501, gnl\|Hg17\|chr17 (77611461-77611095)
	221-501, gnl\|Mm7\|chr11 (120900638-120900243)