Non-Coding RNA Search

Ss1.1-rplac_16257.5

Sequence:


               
               GGTGGCGGCCGCGGGCTCTCTGGGGAGGGGAAAGAACCCAGATGGTTTGGACATTATCGT
CACATATAAGAAAATTCAAGGCCTCCCTATATCCATACCTGTTCGGTATGCCCACTCTGA
CCCATGGCACTTGTGTAATTAAAGCCCAGACCATGCCCACCCCTCAGACCCAGGACGCCT
CTTGATCCAAAGCAGCTTCCGGGGCAAATGCGGGCACAGGCTCCTCCGTGCATGTCACTA
ACCAGCTGACTCTCGTTTCTTCTCTCTCTGTCTCCTGTCCCGCGTGTGTGGCCTGCACTG
CCCCTGGGTGTCTCTCTGCCTCATCCCGCCCTCCGCATGACCCAGGACGGGGCTCTTCAC
CCCCGACATGGCCTTTGAAGCCATTGTGAAAAAACAGATTGTAAAACTCAAAGAGCCAAG
TTTGAAGTGTGTTGATCTCGTGGTTTCAGAACTGGCCACGGTCATTAAAAAGTGTGCCGA
GAAGCTCAGCTCCTACCCCCGGCTGCGAGAGGAGACGGAACGAATCGTCACCACTTACAT
CCGGGAACGGGAGGGGAGAACCAAGGACCAGATTCTTCTTCTGATCGACATCGAGCAGTC
CTACATCAACACGAACCACGAGGACTTCATTGGATTTGCCAATGCCCAGCAGAGAAGCAC
ACAGCTGAACAAGAAGAGAGCCATCCCCAACCAGGTAGCCCACCCCTCCCCGGGCTCGCA
GCTCCACCCTCAGGGGCGGGAGGGCACCAAGGGACCACAGAGCCCAGTGATGGTACCTGA
CTCATGGCATGTCCCACATGGAACTCCCCTCCCCGCCAGCCTCTCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCGGCCGCGGGCTCTCTGGGGAGGGGAAAGAACCCAGATGGTTTGGACATTATCGT
CACATATAAGAAAATTCAAGGCCTCCCTATATCCATACCTGTTCGGTATGCCCACTCTGA
CCCATGGCACTTGTGTAATTAAAGCCCAGACCATGCCCACCCCTCAGACCCAGGACGCCT
CTTGATCCAAAGCAGCTTCCGGGGCAAATGCGGGCACAGGCTCCTCCGTGCATGTCACTA
ACCAGCTGACTCTCGTTTCTTCTCTCTCTGTCTCCTGTCCCGCGTGTGTGGCCTGCACTG
CCCCTGGGTGTCTCTCTGCCTCATCCCGCCCTCCGCATGACCCAGGACGGGGCTCTTCAC
CCCCGACATGGCCTTTGAAGCCATTGTGAAAAAACAGATTGTAAAACTCAAAGAGCCAAG
TTTGAAGTGTGTTGATCTCGTGGTTTCAGAACTGGCCACGGTCATTAAAAAGTGTGCCGA
GAAGCTCAGCTCCTACCCCCGGCTGCGAGAGGAGACGGAACGAATCGTCACCACTTACAT
CCGGGAACGGGAGGGGAGAACCAAGGACCAGATTCTTCTTCTGATCGACATCGAGCAGTC
CTACATCAACACGAACCACGAGGACTTCATTGGATTTGCCAATGCCCAGCAGAGAAGCAC
ACAGCTGAACAAGAAGAGAGCCATCCCCAACCAGGTAGCCCACCCCTCCCCGGGCTCGCA
GCTCCACCCTCAGGGGCGGGAGGGCACCAAGGGACCACAGAGCCCAGTGATGGTACCTGA
CTCATGGCATGTCCCACATGGAACTCCCCTCCCCGCCAGCCTCTCAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-484, - strand, RNAz p=0.923161

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-484, - strand, RNAz p=0.923161

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               23-484, gnl|bosTau2|chr7 (9904947-9905399)
               

               
               23-484, gnl|Hg17|chr19 (10768711-10769194)
               

               
               23-484, gnl|Mm7|chr9 (21359044-21359761)
               


               
               644-826, gnl|bosTau2|chr7 (9911431-9911611)
               

               
               644-826, gnl|Hg17|chr19 (10777593-10777774)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-484, gnl|bosTau2|chr7 (9904947-9905399)
               

               
               23-484, gnl|Hg17|chr19 (10768711-10769194)
               

               
               23-484, gnl|Mm7|chr9 (21359044-21359761)
               


               
               644-826, gnl|bosTau2|chr7 (9911431-9911611)
               

               
               644-826, gnl|Hg17|chr19 (10777593-10777774)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               pla (0.133672)

	23-484, gnl\|bosTau2\|chr7 (9904947-9905399)
	23-484, gnl\|Hg17\|chr19 (10768711-10769194)
	23-484, gnl\|Mm7\|chr9 (21359044-21359761)

	644-826, gnl\|bosTau2\|chr7 (9911431-9911611)
	644-826, gnl\|Hg17\|chr19 (10777593-10777774)