Non-Coding RNA Search

Ss1.1-rplac_16388.5

Sequence:


               
               TGGTTTTTTATTGTCTACTTGGCATATGCTTCTGGAATAATATTCACCATGGTTTTGGAT
GACCTTCCAAACTTAGAAGACATCTATACTTCCCTGTGTTCATCAACAGTAGAGGACTCA
GAGATGGATTTTGACTCTGGACTAGAAGATGATGACTCAAAAAGTGATAGTATTTTGGAG
GATTCCACAATCTTTGTGGCCTTCAAAGGAAATATAGATGATAAAGACTTCAAATGGAAA
TTGGACACAATATTGGAGAATGTGCCCAGTTTGTTACACATGGAATCCAGCAAGCTAAAG
GTACAGAAGGTGGAGCCCTGGAATAGTGTGCGTGTGACATTCAACATCCCCCGGGAAGCA
GCGGAACGGCTACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTCGGGACCTGGGAATT
CTCTCTGTTCAGATTGAAGGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTTTTATTGTCTACTTGGCATATGCTTCTGGAATAATATTCACCATGGTTTTGGAT
GACCTTCCAAACTTAGAAGACATCTATACTTCCCTGTGTTCATCAACAGTAGAGGACTCA
GAGATGGATTTTGACTCTGGACTAGAAGATGATGACTCAAAAAGTGATAGTATTTTGGAG
GATTCCACAATCTTTGTGGCCTTCAAAGGAAATATAGATGATAAAGACTTCAAATGGAAA
TTGGACACAATATTGGAGAATGTGCCCAGTTTGTTACACATGGAATCCAGCAAGCTAAAG
GTACAGAAGGTGGAGCCCTGGAATAGTGTGCGTGTGACATTCAACATCCCCCGGGAAGCA
GCGGAACGGCTACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTCGGGACCTGGGAATT
CTCTCTGTTCAGATTGAAGGGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56203897|emb|CAI19376.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56203897|emb|CAI19376.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-282, + strand, RNAz p=0.882905

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-282, + strand, RNAz p=0.882905

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014071, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014071, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-283, gnl|bosTau2|chr13 (46741812-46742091)
               

               
               4-283, gnl|canFam2|chr24 (26833170-26832836)
               

               
               4-283, gnl|dasNov1|scaffold_31107 (12101-12434)
               

               
               4-283, gnl|echTel1|scaffold_114826 (146-482)
               

               
               4-283, gnl|hg17|chr2 (159385256-159385556)
               

               
               4-283, gnl|Hg17|chr20 (32833864-32833585)
               

               
               4-283, gnl|loxAfr1|scaffold_7904 (50862-50526)
               

               
               4-283, gnl|mm7|chr2 (155178999-155178676)
               

               
               4-283, gnl|Mm7|chr2 (155178995-155178718)
               

               
               4-283, gnl|monDom2|scaffold_6 (12249584-12249901)
               

               
               4-283, gnl|panTro1|chr13 (48721961-48722261)
               

               
               4-283, gnl|rheMac2|chr12 (22286755-22287055)
               

               
               4-283, gnl|rn3|chr3 (145833262-145832945)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-283, gnl|bosTau2|chr13 (46741812-46742091)
               

               
               4-283, gnl|canFam2|chr24 (26833170-26832836)
               

               
               4-283, gnl|dasNov1|scaffold_31107 (12101-12434)
               

               
               4-283, gnl|echTel1|scaffold_114826 (146-482)
               

               
               4-283, gnl|hg17|chr2 (159385256-159385556)
               

               
               4-283, gnl|Hg17|chr20 (32833864-32833585)
               

               
               4-283, gnl|loxAfr1|scaffold_7904 (50862-50526)
               

               
               4-283, gnl|mm7|chr2 (155178999-155178676)
               

               
               4-283, gnl|Mm7|chr2 (155178995-155178718)
               

               
               4-283, gnl|monDom2|scaffold_6 (12249584-12249901)
               

               
               4-283, gnl|panTro1|chr13 (48721961-48722261)
               

               
               4-283, gnl|rheMac2|chr12 (22286755-22287055)
               

               
               4-283, gnl|rn3|chr3 (145833262-145832945)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	4-283, gnl\|bosTau2\|chr13 (46741812-46742091)
	4-283, gnl\|canFam2\|chr24 (26833170-26832836)
	4-283, gnl\|dasNov1\|scaffold_31107 (12101-12434)
	4-283, gnl\|echTel1\|scaffold_114826 (146-482)
	4-283, gnl\|hg17\|chr2 (159385256-159385556)
	4-283, gnl\|Hg17\|chr20 (32833864-32833585)
	4-283, gnl\|loxAfr1\|scaffold_7904 (50862-50526)
	4-283, gnl\|mm7\|chr2 (155178999-155178676)
	4-283, gnl\|Mm7\|chr2 (155178995-155178718)
	4-283, gnl\|monDom2\|scaffold_6 (12249584-12249901)
	4-283, gnl\|panTro1\|chr13 (48721961-48722261)
	4-283, gnl\|rheMac2\|chr12 (22286755-22287055)
	4-283, gnl\|rn3\|chr3 (145833262-145832945)