Ss1.1-rplac_16521.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGACATATTATCGACAACACTACAACTGTATTTTCCCCCAACAGATAAACCAGACAA ACCTACAGGACCAATTGTGATTGAAGCTCTATTGAAGAACTCAGCGGTGATCAGCTGGAA GCCACCTGCAGATGATGGTGGCTCCTGGATCACCAATTATGTGGTGGAGAAATGTGAGGC CAAGGAAGGGGCTGAATGGCAATTGGTGTCTTCAGCCATCTCGGTGACAACCTGTAGAAT TGTGAACCTTACAGAAAACGCTGGCTACTACTTCCGAGTTTCAGCTCAGAACACTTTCGG CATCAGTGATCCTCTGGAAGTCCCCTCGGTTGTGATCATTAAGAGTCCATTTGGTGAGTA CAACCTCTACAATCTTCATAGGGCAAAATTCCATCTGTACATAAAACTTTAACAGAAATC AGTTCTTGAGAAGCGTGAGAAGAAACAGAACAAATGGATTTCTGTGACAACAGATGAAAT TCGAGAAACCGTCTCTTCGGTGCAAAACCTTATTGAAGGTCTTGAATATGAGTTCCGTGT GAAATGTGAAAACCTTAAAATCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGACATATTATCGACAACACTACAACTGTATTTTCCCCCAACAGATAAACCAGACAA ACCTACAGGACCAATTGTGATTGAAGCTCTATTGAAGAACTCAGCGGTGATCAGCTGGAA GCCACCTGCAGATGATGGTGGCTCCTGGATCACCAATTATGTGGTGGAGAAATGTGAGGC CAAGGAAGGGGCTGAATGGCAATTGGTGTCTTCAGCCATCTCGGTGACAACCTGTAGAAT TGTGAACCTTACAGAAAACGCTGGCTACTACTTCCGAGTTTCAGCTCAGAACACTTTCGG CATCAGTGATCCTCTGGAAGTCCCCTCGGTTGTGATCATTAAGAGTCCATTTGGTGAGTA CAACCTCTACAATCTTCATAGGGCAAAATTCCATCTGTACATAAAACTTTAACAGAAATC AGTTCTTGAGAAGCGTGAGAAGAAACAGAACAAATGGATTTCTGTGACAACAGATGAAAT TCGAGAAACCGTCTCTTCGGTGCAAAACCTTATTGAAGGTCTTGAATATGAGTTCCGTGT GAAATGTGAAAACCTTAAAATCAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 80-199, + strand, RNAz p=0.97359 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-199, + strand, RNAz p=0.97359 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-410, gnl|bosTau2|chr2 (7867293-7867706) | |
| 1-410, gnl|Hg17|chr2 (179227523-179227115) | |
| 1-410, gnl|Mm7|chr2 (76559212-76558855) | |
| 414-555, gnl|bosTau2|chr2 (7868112-7868254) | |
| 414-555, gnl|canFam2|chr36 (25184316-25184738) | |
| 414-555, gnl|danRer3|chr9 (37488000-37488404) | |
| 414-555, gnl|dasNov1|scaffold_41173 (11708-11292) | |
| 414-555, gnl|echTel1|scaffold_317123 (359357-358939) | |
| 414-555, gnl|fr1|chrUn (199941298-199941702) | |
| 414-555, gnl|galGal2|chr7 (16175543-16175131) | |
| 414-555, gnl|hg17|chr2 (179226434-179226847) | |
| 414-555, gnl|Hg17|chr2 (179226708-179226566) | |
| 414-555, gnl|loxAfr1|scaffold_7218 (37369-37783) | |
| 414-555, gnl|mm7|chr2 (76558263-76558671) | |
| 414-555, gnl|Mm7|chr2 (76558537-76558395) | |
| 414-555, gnl|monDom2|scaffold_2 (79382319-79382732) | |
| 414-555, gnl|oryCun1|scaffold_206234 (515343-514929) | |
| 414-555, gnl|panTro1|chr13 (69012197-69012610) | |
| 414-555, gnl|rheMac2|chr12 (42186095-42186509) | |
| 414-555, gnl|rn3|chr3 (59311404-59311812) | |
| 414-555, gnl|tetNig1|chrUn_random (42038038-42037645) | |
| 414-555, gnl|xenTro1|scaffold_546 (315564-315960) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-410, gnl|bosTau2|chr2 (7867293-7867706) | |
| 1-410, gnl|Hg17|chr2 (179227523-179227115) | |
| 1-410, gnl|Mm7|chr2 (76559212-76558855) | |
| 414-555, gnl|bosTau2|chr2 (7868112-7868254) | |
| 414-555, gnl|canFam2|chr36 (25184316-25184738) | |
| 414-555, gnl|danRer3|chr9 (37488000-37488404) | |
| 414-555, gnl|dasNov1|scaffold_41173 (11708-11292) | |
| 414-555, gnl|echTel1|scaffold_317123 (359357-358939) | |
| 414-555, gnl|fr1|chrUn (199941298-199941702) | |
| 414-555, gnl|galGal2|chr7 (16175543-16175131) | |
| 414-555, gnl|hg17|chr2 (179226434-179226847) | |
| 414-555, gnl|Hg17|chr2 (179226708-179226566) | |
| 414-555, gnl|loxAfr1|scaffold_7218 (37369-37783) | |
| 414-555, gnl|mm7|chr2 (76558263-76558671) | |
| 414-555, gnl|Mm7|chr2 (76558537-76558395) | |
| 414-555, gnl|monDom2|scaffold_2 (79382319-79382732) | |
| 414-555, gnl|oryCun1|scaffold_206234 (515343-514929) | |
| 414-555, gnl|panTro1|chr13 (69012197-69012610) | |
| 414-555, gnl|rheMac2|chr12 (42186095-42186509) | |
| 414-555, gnl|rn3|chr3 (59311404-59311812) | |
| 414-555, gnl|tetNig1|chrUn_random (42038038-42037645) | |
| 414-555, gnl|xenTro1|scaffold_546 (315564-315960) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |