Ss1.1-rplac_16569.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCATTTGTATCGCAGCCACTGGAAAACCAGTTGCACACATTGATTGGGAAGGTGATCTTG GTGAAATGGAATCCACTACAACTTCTTTTCCAAATGAAACAGCAACAATTGTCAGCCAGT ACAAGCTTTTTCCTACCAGATTTGCTAGAGGAAGGCGAATTACTTGTGTTGTAAAACATC CAGCCTTGGAAAAGGACATCCGATATTCTTTTATATTAGATATACAATATGCTCCTGAGG TTTCAGTAACAGGCTATGATGGAAACTGGTTTGTAGGAAGAAAAGGTGTTAATCTCAAGT GTAATGCTGATGCAAATCCACCACCCTTCAAGTCTGTTTGGAGCAGGTTGGATGGACAGT GGCCTGATGGTTTATTGGCTTCAGACAATACTCTTCATTTTGTCCATCCACTGACTTTCA ATTATTCTGGTGTTTATGTCTGTAAAGTGACCAATTCCCTTGGTCAAAGAAGCGATCAAA AAGTCATCTATATTTCAGATCCTCCTACTACTACCACCCTTCAGCCTACAGTTCAGTGGC ATCCCTCAACTGCTGACTTCGAGGATCTAGCAACAGAACCAAAAAAATTGCCCTTCCCAT TGTCAACTTTGGCAACAATTAAGGATGACACAATTGGCACAATCATTGCTAGTGTAGTGG GTGGGGCTCTCTTCGTAGTACTTGTAAGTGTTCTGGCTGGAATATTCTGCTATAGGAGAA GACGGACGTTTCGTGGAGACTACTTTGCCAAGAACTACATTCCACCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCATTTGTATCGCAGCCACTGGAAAACCAGTTGCACACATTGATTGGGAAGGTGATCTTG GTGAAATGGAATCCACTACAACTTCTTTTCCAAATGAAACAGCAACAATTGTCAGCCAGT ACAAGCTTTTTCCTACCAGATTTGCTAGAGGAAGGCGAATTACTTGTGTTGTAAAACATC CAGCCTTGGAAAAGGACATCCGATATTCTTTTATATTAGATATACAATATGCTCCTGAGG TTTCAGTAACAGGCTATGATGGAAACTGGTTTGTAGGAAGAAAAGGTGTTAATCTCAAGT GTAATGCTGATGCAAATCCACCACCCTTCAAGTCTGTTTGGAGCAGGTTGGATGGACAGT GGCCTGATGGTTTATTGGCTTCAGACAATACTCTTCATTTTGTCCATCCACTGACTTTCA ATTATTCTGGTGTTTATGTCTGTAAAGTGACCAATTCCCTTGGTCAAAGAAGCGATCAAA AAGTCATCTATATTTCAGATCCTCCTACTACTACCACCCTTCAGCCTACAGTTCAGTGGC ATCCCTCAACTGCTGACTTCGAGGATCTAGCAACAGAACCAAAAAAATTGCCCTTCCCAT TGTCAACTTTGGCAACAATTAAGGATGACACAATTGGCACAATCATTGCTAGTGTAGTGG GTGGGGCTCTCTTCGTAGTACTTGTAAGTGTTCTGGCTGGAATATTCTGCTATAGGAGAA GACGGACGTTTCGTGGAGACTACTTTGCCAAGAACTACATTCCACCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 80-199, - strand, RNAz p=0.75057 | |
| 497-615, - strand, RNAz p=0.804654 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-199, - strand, RNAz p=0.75057 | |
| 497-615, - strand, RNAz p=0.804654 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-226, gnl|bosTau2|chr1 (32896747-32896522) | |
| 1-226, gnl|Hg17|chr3 (112320262-112320487) | |
| 1-226, gnl|Mm7|chr16 (46237962-46237737) | |
| 229-348, gnl|bosTau2|chr1 (32893114-32892995) | |
| 229-348, gnl|canFam2|chr33 (18962417-18962599) | |
| 229-348, gnl|dasNov1|scaffold_30167 (42452-42632) | |
| 229-348, gnl|echTel1|scaffold_301132 (12114-12277) | |
| 229-348, gnl|fr1|chrUn (15452438-15452310) | |
| 229-348, gnl|hg17|chr3 (112323619-112323798) | |
| 229-348, gnl|Hg17|chr3 (112323658-112323777) | |
| 229-348, gnl|loxAfr1|scaffold_508 (19926-20092) | |
| 229-348, gnl|mm7|chr16 (46237191-46237016) | |
| 229-348, gnl|Mm7|chr16 (46237151-46237032) | |
| 229-348, gnl|monDom2|scaffold_24 (4789432-4789598) | |
| 229-348, gnl|panTro1|chr2 (113911935-113912114) | |
| 229-348, gnl|rheMac2|chr2 (31247049-31247228) | |
| 229-348, gnl|rn3|chr11 (55935941-55936118) | |
| 229-348, gnl|tetNig1|chr16 (4125597-4125766) | |
| 229-348, gnl|xenTro1|scaffold_654 (428958-428772) | |
| 497-768, gnl|bosTau2|chr1 (32880238-32879967) | |
| 497-768, gnl|Hg17|chr3 (112335170-112335441) | |
| 497-768, gnl|Mm7|chr16 (46227890-46227619) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-226, gnl|bosTau2|chr1 (32896747-32896522) | |
| 1-226, gnl|Hg17|chr3 (112320262-112320487) | |
| 1-226, gnl|Mm7|chr16 (46237962-46237737) | |
| 229-348, gnl|bosTau2|chr1 (32893114-32892995) | |
| 229-348, gnl|canFam2|chr33 (18962417-18962599) | |
| 229-348, gnl|dasNov1|scaffold_30167 (42452-42632) | |
| 229-348, gnl|echTel1|scaffold_301132 (12114-12277) | |
| 229-348, gnl|fr1|chrUn (15452438-15452310) | |
| 229-348, gnl|hg17|chr3 (112323619-112323798) | |
| 229-348, gnl|Hg17|chr3 (112323658-112323777) | |
| 229-348, gnl|loxAfr1|scaffold_508 (19926-20092) | |
| 229-348, gnl|mm7|chr16 (46237191-46237016) | |
| 229-348, gnl|Mm7|chr16 (46237151-46237032) | |
| 229-348, gnl|monDom2|scaffold_24 (4789432-4789598) | |
| 229-348, gnl|panTro1|chr2 (113911935-113912114) | |
| 229-348, gnl|rheMac2|chr2 (31247049-31247228) | |
| 229-348, gnl|rn3|chr11 (55935941-55936118) | |
| 229-348, gnl|tetNig1|chr16 (4125597-4125766) | |
| 229-348, gnl|xenTro1|scaffold_654 (428958-428772) | |
| 497-768, gnl|bosTau2|chr1 (32880238-32879967) | |
| 497-768, gnl|Hg17|chr3 (112335170-112335441) | |
| 497-768, gnl|Mm7|chr16 (46227890-46227619) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.207814) | |
| ill (0.175593) | |
| lun (0.150489) | |
| lin (0.145603) | |
| pla (0.133672) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| ill (0.175593) | |
| lun (0.150489) | |
| lin (0.145603) | |
| pla (0.133672) |