Ss1.1-rplac_16602.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCTGCCTTCCGCCTGCCAGCCGGCCCGCCCTTGGAGTTCACCAAGCCGCAATGAAGA GCTTCTTACAGTGAAAGGAAAGTAGGTCGCGTCCACTGAAAATGCCTTTAAGGGACAAAT ACTGTCAAACTGACCACCATCATCACGGATGCTGTGAACCAGTTTATATCCTGGAACCTG GAGATGCTCCTTTGTTACAGCAACCACTACAGACATCCAAATCTGGTATTCAGCAAATAA TTGAGTGCTTTCGATCAGGAACTAAACAACTTAAGCACATTTTATTAAAAGACGTGGACA CTATTTTTGAATGTAAATTATGCCGCAGTCTCTTCAGAGGATTACCAAATTTAATTACCC ATAAAAAGTTCTACTGCCCACCAAGTCTTCAGATGGATGACAACCTTCCTGATGTAAATG ATAAACAAAGCCAAGCCATAAATGATCTCCTAGAAGCCATATATCCAAGTGTGGACAAGC AAGAATATATTATTAAACTAGAACCCATAGAAACTAACCAAAATGCAGTGTTTCAGTATA TCTCAAGGACTGATAATCCTACCGAAGTTGCAGAGTCAAGCAGTACTCCTGAACAAACCG AAGTTCAAATACAGGACACTAGCACTGAACAGTCTAACACCGCTCCAGTTACAGACACAG AGGTGGAAACTGTAGAGCCCCCTCCTGTTGAGATTGTTGCAGATGAAGTTGTACCTACAT CTGATGAACAACCTCAGGAATCACAGGCTGACTTGGAAACTTCTGACAATTCTGATTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCTGCCTTCCGCCTGCCAGCCGGCCCGCCCTTGGAGTTCACCAAGCCGCAATGAAGA GCTTCTTACAGTGAAAGGAAAGTAGGTCGCGTCCACTGAAAATGCCTTTAAGGGACAAAT ACTGTCAAACTGACCACCATCATCACGGATGCTGTGAACCAGTTTATATCCTGGAACCTG GAGATGCTCCTTTGTTACAGCAACCACTACAGACATCCAAATCTGGTATTCAGCAAATAA TTGAGTGCTTTCGATCAGGAACTAAACAACTTAAGCACATTTTATTAAAAGACGTGGACA CTATTTTTGAATGTAAATTATGCCGCAGTCTCTTCAGAGGATTACCAAATTTAATTACCC ATAAAAAGTTCTACTGCCCACCAAGTCTTCAGATGGATGACAACCTTCCTGATGTAAATG ATAAACAAAGCCAAGCCATAAATGATCTCCTAGAAGCCATATATCCAAGTGTGGACAAGC AAGAATATATTATTAAACTAGAACCCATAGAAACTAACCAAAATGCAGTGTTTCAGTATA TCTCAAGGACTGATAATCCTACCGAAGTTGCAGAGTCAAGCAGTACTCCTGAACAAACCG AAGTTCAAATACAGGACACTAGCACTGAACAGTCTAACACCGCTCCAGTTACAGACACAG AGGTGGAAACTGTAGAGCCCCCTCCTGTTGAGATTGTTGCAGATGAAGTTGTACCTACAT CTGATGAACAACCTCAGGAATCACAGGCTGACTTGGAAACTTCTGACAATTCTGATTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 643-780, - strand, RNAz p=0.963997 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 643-780, - strand, RNAz p=0.963997 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 44-171, gnl|bosTau2|chr4 (48390097-48389971) | |
| 44-171, gnl|Hg17|chr7 (126625620-126625494) | |
| 44-171, gnl|Mm7|chr6 (28192982-28192856) | |
| 255-402, gnl|bosTau2|chr4 (48374906-48374759) | |
| 255-402, gnl|canFam2|chr14 (11837842-11837684) | |
| 255-402, gnl|danRer3|chr25 (22372738-22372900) | |
| 255-402, gnl|dasNov1|scaffold_9685 (248-90) | |
| 255-402, gnl|echTel1|scaffold_134143 (534-375) | |
| 255-402, gnl|fr1|chrUn (135244824-135244666) | |
| 255-402, gnl|galGal2|chr1 (17788237-17788079) | |
| 255-402, gnl|hg17|chr7 (126611187-126611345) | |
| 255-402, gnl|Hg17|chr7 (126611338-126611191) | |
| 255-402, gnl|loxAfr1|scaffold_1951 (108746-108904) | |
| 255-402, gnl|mm7|chr6 (28179283-28179440) | |
| 255-402, gnl|Mm7|chr6 (28179434-28179287) | |
| 255-402, gnl|monDom2|scaffold_22 (17441606-17441448) | |
| 255-402, gnl|oryCun1|scaffold_145242 (9922-9764) | |
| 255-402, gnl|panTro1|chr6 (129024037-129024195) | |
| 255-402, gnl|rheMac2|chr3 (164940073-164940231) | |
| 255-402, gnl|rn3|chr4 (55292146-55292303) | |
| 255-402, gnl|tetNig1|chr19 (3822425-3822554) | |
| 255-402, gnl|xenTro1|scaffold_668 (26062-26220) | |
| 403-780, gnl|bosTau2|chr4 (48372582-48372205) | |
| 403-780, gnl|Hg17|chr7 (126609039-126608662) | |
| 403-780, gnl|Mm7|chr6 (28176809-28176429) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-171, gnl|bosTau2|chr4 (48390097-48389971) | |
| 44-171, gnl|Hg17|chr7 (126625620-126625494) | |
| 44-171, gnl|Mm7|chr6 (28192982-28192856) | |
| 255-402, gnl|bosTau2|chr4 (48374906-48374759) | |
| 255-402, gnl|canFam2|chr14 (11837842-11837684) | |
| 255-402, gnl|danRer3|chr25 (22372738-22372900) | |
| 255-402, gnl|dasNov1|scaffold_9685 (248-90) | |
| 255-402, gnl|echTel1|scaffold_134143 (534-375) | |
| 255-402, gnl|fr1|chrUn (135244824-135244666) | |
| 255-402, gnl|galGal2|chr1 (17788237-17788079) | |
| 255-402, gnl|hg17|chr7 (126611187-126611345) | |
| 255-402, gnl|Hg17|chr7 (126611338-126611191) | |
| 255-402, gnl|loxAfr1|scaffold_1951 (108746-108904) | |
| 255-402, gnl|mm7|chr6 (28179283-28179440) | |
| 255-402, gnl|Mm7|chr6 (28179434-28179287) | |
| 255-402, gnl|monDom2|scaffold_22 (17441606-17441448) | |
| 255-402, gnl|oryCun1|scaffold_145242 (9922-9764) | |
| 255-402, gnl|panTro1|chr6 (129024037-129024195) | |
| 255-402, gnl|rheMac2|chr3 (164940073-164940231) | |
| 255-402, gnl|rn3|chr4 (55292146-55292303) | |
| 255-402, gnl|tetNig1|chr19 (3822425-3822554) | |
| 255-402, gnl|xenTro1|scaffold_668 (26062-26220) | |
| 403-780, gnl|bosTau2|chr4 (48372582-48372205) | |
| 403-780, gnl|Hg17|chr7 (126609039-126608662) | |
| 403-780, gnl|Mm7|chr6 (28176809-28176429) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cty (0.10408) |