Ss1.1-rplac_16643.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTGTCTTTT------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTGAACACGGATGTATGAAGTTTAGCGGTATAAAGTTTTTCTCCAAGG TGTCAAAAGTTGCAGCATCCGCTCTCAGCCAGGTTCAAGCTCAAGGTCCTGTGAGCTTCT CTCTCCCTGTCTCAGAGCCATGTGCCCGAAGGATGGATTACCCGCAGACACGGTGAATGA AGGAGGTCCCCGTGCCCGCCAGCCTGCCGGGATGGGCCACTGCTGCTGCAAGCCTTATAA CTGCCTTCAGTGCCTGGACAAGACGAGCGAAAGTGCCCTTGAGAAAGAAAAAGAGCTGTC GATCGAACTTGCGAACATCAGGGATGAAGTTGCCTTCCACACGGCCAAGTGCGAGCAGCT GCAGAAGGAGAAGGAGGAGCTGGAGCGGCGCTGCGAGGACGAGGTGCGCAGGCTGGGCTG GCAGCAGCGGGCCGAGCTGCGGGAGCTGGAGCAGCGGCTGCAGCTGCAGTTCCAGGCGGA GGGGGCCCGGCTCCAGGACGAGCATCGCGCGCAGCTGCTGCGGCTCGGGTGTCAGCACCA GGAGCAGGTGGAGGACATCACCGCCAGCCACGAGGCTGCTCTCCTAGAGATGGAAAACAG CCACACGGTTGCCATCGCGATCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTGTCTTTT------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTGAACACGGATGTATGAAGTTTAGCGGTATAAAGTTTTTCTCCAAGG TGTCAAAAGTTGCAGCATCCGCTCTCAGCCAGGTTCAAGCTCAAGGTCCTGTGAGCTTCT CTCTCCCTGTCTCAGAGCCATGTGCCCGAAGGATGGATTACCCGCAGACACGGTGAATGA AGGAGGTCCCCGTGCCCGCCAGCCTGCCGGGATGGGCCACTGCTGCTGCAAGCCTTATAA CTGCCTTCAGTGCCTGGACAAGACGAGCGAAAGTGCCCTTGAGAAAGAAAAAGAGCTGTC GATCGAACTTGCGAACATCAGGGATGAAGTTGCCTTCCACACGGCCAAGTGCGAGCAGCT GCAGAAGGAGAAGGAGGAGCTGGAGCGGCGCTGCGAGGACGAGGTGCGCAGGCTGGGCTG GCAGCAGCGGGCCGAGCTGCGGGAGCTGGAGCAGCGGCTGCAGCTGCAGTTCCAGGCGGA GGGGGCCCGGCTCCAGGACGAGCATCGCGCGCAGCTGCTGCGGCTCGGGTGTCAGCACCA GGAGCAGGTGGAGGACATCACCGCCAGCCACGAGGCTGCTCTCCTAGAGATGGAAAACAG CCACACGGTTGCCATCGCGATCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 401-520, + strand, RNAz p=0.803086 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 401-520, + strand, RNAz p=0.803086 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 114-265, gnl|bosTau2|chr12 (15677898-15677747) | |
| 114-265, gnl|canFam2|chr25 (13425154-13424909) | |
| 114-265, gnl|dasNov1|scaffold_7104 (46499-46251) | |
| 114-265, gnl|echTel1|scaffold_222609 (7756-7986) | |
| 114-265, gnl|hg17|chr13 (28900787-28901034) | |
| 114-265, gnl|Hg17|chr13 (28900882-28901033) | |
| 114-265, gnl|mm7|chr5 (147159936-147160173) | |
| 114-265, gnl|Mm7|chr5 (147160032-147160172) | |
| 114-265, gnl|monDom2|scaffold_15 (38775400-38775691) | |
| 114-265, gnl|oryCun1|scaffold_205624 (47511-47749) | |
| 114-265, gnl|panTro1|chr14 (28092589-28092836) | |
| 114-265, gnl|rheMac2|chr17 (8967073-8967323) | |
| 114-265, gnl|rn3|chr12 (7331642-7331405) | |
| 332-550, gnl|bosTau2|chr12 (15639426-15639208) | |
| 332-550, gnl|canFam2|chr25 (13379879-13379655) | |
| 332-550, gnl|dasNov1|scaffold_58457 (9250-9474) | |
| 332-550, gnl|echTel1|scaffold_176630 (2837-3061) | |
| 332-550, gnl|fr1|chrUn (130759956-130759733) | |
| 332-550, gnl|galGal2|chr1 (167515405-167515181) | |
| 332-550, gnl|hg17|chr13 (28952284-28952508) | |
| 332-550, gnl|Hg17|chr13 (28952286-28952504) | |
| 332-550, gnl|loxAfr1|scaffold_6804 (48826-48603) | |
| 332-550, gnl|mm7|chr5 (147183580-147183800) | |
| 332-550, gnl|Mm7|chr5 (147183582-147183800) | |
| 332-550, gnl|monDom2|scaffold_15 (38842525-38842749) | |
| 332-550, gnl|oryCun1|scaffold_204892 (5238-5014) | |
| 332-550, gnl|panTro1|chr14_random (7737243-7737019) | |
| 332-550, gnl|rheMac2|chr17 (9018695-9018919) | |
| 332-550, gnl|rn3|chr12 (7308798-7308578) | |
| 332-550, gnl|tetNig1|chr16 (5966209-5965989) | |
| 332-550, gnl|xenTro1|scaffold_978 (245921-245697) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-265, gnl|bosTau2|chr12 (15677898-15677747) | |
| 114-265, gnl|canFam2|chr25 (13425154-13424909) | |
| 114-265, gnl|dasNov1|scaffold_7104 (46499-46251) | |
| 114-265, gnl|echTel1|scaffold_222609 (7756-7986) | |
| 114-265, gnl|hg17|chr13 (28900787-28901034) | |
| 114-265, gnl|Hg17|chr13 (28900882-28901033) | |
| 114-265, gnl|mm7|chr5 (147159936-147160173) | |
| 114-265, gnl|Mm7|chr5 (147160032-147160172) | |
| 114-265, gnl|monDom2|scaffold_15 (38775400-38775691) | |
| 114-265, gnl|oryCun1|scaffold_205624 (47511-47749) | |
| 114-265, gnl|panTro1|chr14 (28092589-28092836) | |
| 114-265, gnl|rheMac2|chr17 (8967073-8967323) | |
| 114-265, gnl|rn3|chr12 (7331642-7331405) | |
| 332-550, gnl|bosTau2|chr12 (15639426-15639208) | |
| 332-550, gnl|canFam2|chr25 (13379879-13379655) | |
| 332-550, gnl|dasNov1|scaffold_58457 (9250-9474) | |
| 332-550, gnl|echTel1|scaffold_176630 (2837-3061) | |
| 332-550, gnl|fr1|chrUn (130759956-130759733) | |
| 332-550, gnl|galGal2|chr1 (167515405-167515181) | |
| 332-550, gnl|hg17|chr13 (28952284-28952508) | |
| 332-550, gnl|Hg17|chr13 (28952286-28952504) | |
| 332-550, gnl|loxAfr1|scaffold_6804 (48826-48603) | |
| 332-550, gnl|mm7|chr5 (147183580-147183800) | |
| 332-550, gnl|Mm7|chr5 (147183582-147183800) | |
| 332-550, gnl|monDom2|scaffold_15 (38842525-38842749) | |
| 332-550, gnl|oryCun1|scaffold_204892 (5238-5014) | |
| 332-550, gnl|panTro1|chr14_random (7737243-7737019) | |
| 332-550, gnl|rheMac2|chr17 (9018695-9018919) | |
| 332-550, gnl|rn3|chr12 (7308798-7308578) | |
| 332-550, gnl|tetNig1|chr16 (5966209-5965989) | |
| 332-550, gnl|xenTro1|scaffold_978 (245921-245697) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) | |
| pla (0.133672) |