Non-Coding RNA Search

Ss1.1-rplac_16716.5

Sequence:


               
               TGAACCCGCATCCTCATGAATACTAATCAGATTCATTCACAGAGGAACAAATTTTTTTTG
CCTTCGAAATGAGAGGAATGTTGACATTGTATTCTGTGTTATTTCAAGGATCTATAGGAA
AGGGATTATTGGGAACAAAGACACATGATGGAGATGTTCCTCATTAATTTCTTTATTCTA
AAAATCAGCTTATATTTATGCTTTAAATATAAACAGGATCAAGAATCAAGTGAGTATTCC
TACTGGCTAATGGTAATAACTTACATTTGTGTAATATTCAGTTTTTCAAATTAGTCTCAG
AACCCCTAAATGGGTGTTCCTGGATACTAGAAAGTTCAGTGTTGGAAATGTAAACACTTG
TTACTTCTTTCTACTGAATTTTAAAAATCCATTTTAGAAGTCAGAGCACACTATTTTCAT
GGAATAAGGTAGTCAGAGGGGGCAACTTCACTCCCTTTAGTGAAGTTGAACCATATTCAG
GAGTTTGCAATTTGCCTTTCACAAATATTGGCAACTATATGGTTAGCCATGGTTCCTCCT
TTGTTTGGATTGTCAACTGGAAGCAATTTGTACCTCCTTGGTTATTTGCAGAAAGAGAAG
AGAAAAGAAACAGCATCGAAATACAGCCTTGAAGTGAGAGTGCTTTCATTTATAAGTGAG
GCTATTGCTAAATATGACTAACTGTCCTTCATGAAATATAAAATTATACTCTTACTGATT
GTCCTGGTTGAAATTTTCCTGTTTTTCTATAATAATCATTAGCCAAAACAACTTTCTAAT
CTTGTAATGCCAACAATGTGCAGATTTAGGAGCTTTTTAGTACTAAGCATATAATAAATC
TTCAGTAAATATTTTTGTCTTTGGGTACTAACTATAATATGTATAAGGAGTATAAATTCT
TAATTATTATTTAAAAATAAACACTAGTTTGTAGCAAAAAATGAATAAAAATGTTACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACCCGCATCCTCATGAATACTAATCAGATTCATTCACAGAGGAACAAATTTTTTTTG
CCTTCGAAATGAGAGGAATGTTGACATTGTATTCTGTGTTATTTCAAGGATCTATAGGAA
AGGGATTATTGGGAACAAAGACACATGATGGAGATGTTCCTCATTAATTTCTTTATTCTA
AAAATCAGCTTATATTTATGCTTTAAATATAAACAGGATCAAGAATCAAGTGAGTATTCC
TACTGGCTAATGGTAATAACTTACATTTGTGTAATATTCAGTTTTTCAAATTAGTCTCAG
AACCCCTAAATGGGTGTTCCTGGATACTAGAAAGTTCAGTGTTGGAAATGTAAACACTTG
TTACTTCTTTCTACTGAATTTTAAAAATCCATTTTAGAAGTCAGAGCACACTATTTTCAT
GGAATAAGGTAGTCAGAGGGGGCAACTTCACTCCCTTTAGTGAAGTTGAACCATATTCAG
GAGTTTGCAATTTGCCTTTCACAAATATTGGCAACTATATGGTTAGCCATGGTTCCTCCT
TTGTTTGGATTGTCAACTGGAAGCAATTTGTACCTCCTTGGTTATTTGCAGAAAGAGAAG
AGAAAAGAAACAGCATCGAAATACAGCCTTGAAGTGAGAGTGCTTTCATTTATAAGTGAG
GCTATTGCTAAATATGACTAACTGTCCTTCATGAAATATAAAATTATACTCTTACTGATT
GTCCTGGTTGAAATTTTCCTGTTTTTCTATAATAATCATTAGCCAAAACAACTTTCTAAT
CTTGTAATGCCAACAATGTGCAGATTTAGGAGCTTTTTAGTACTAAGCATATAATAAATC
TTCAGTAAATATTTTTGTCTTTGGGTACTAACTATAATATGTATAAGGAGTATAAATTCT
TAATTATTATTTAAAAATAAACACTAGTTTGTAGCAAAAAATGAATAAAAATGTTACTTT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               60-250, gnl|bosTau2|chr29 (580858-581045)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-250, gnl|bosTau2|chr29 (580858-581045)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ret (0.643666)
               

               
               lin (0.582411)
               

               
               sme (0.305437)
               

               
               lyg (0.266205)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               lin (0.582411)
               

               
               sme (0.305437)
               

               
               lyg (0.266205)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

	ret (0.643666)
	lin (0.582411)
	sme (0.305437)
	lyg (0.266205)
	sin (0.174948)
	liv (0.146284)
	pla (0.133672)
	kid (0.129735)
	bla (0.124347)