Ss1.1-rplac_16949.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCCACACGCCGCTGAGCACGTGGATGGCCTGCGTGCGGGGCCCGTGTCCCGCCAACTC CACGTCTGGCAACGATTCGCTCACCTCCACGCCTTGCCCCTCAAAGTCCATGGCCTCAAA CAGCACCACGGCCGGGTCCCCGAAGTCCGTCCTGATGACCCGCAGGGAGGTCAGCACCTC GTTATAGCCTCCCCAGTGTGACCAATCAGCGTATTCCCCCTCCTCCAGCAGATACTGGTG GCCCCGGAAGCCCTCCTTCTCGTAGCCCACCCAGCAGCCCCCAAGAACTCGCAGGGACCC CACAGAGGCCAAGTTGGGGCTCTGGCTGTCCTCTGGCTGCTGAAGGTTGTAGATGTCTCG GCTCACTTCCCAGCTCTGGCCCTGAAAGTCTGGGGCCTCATACACCACGGCCTTGGGCTC ACCTGGCTTCTCCACACTTGGGCAGCCCAATCTCATGGGCTTCAGGGAGCCCACGCTGGG GTCTGATGCACCCCAGGCCTCTGAGTTGGGGTACTCTCCAGGCTCCAGGATGCAGGGGGT GTTTTTCAAAGAAGGGTTTGGGGTATAGAAGCCACAGTCCTGCGGATACAATGGCAGATG CCACCTGCAGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCCACACGCCGCTGAGCACGTGGATGGCCTGCGTGCGGGGCCCGTGTCCCGCCAACTC CACGTCTGGCAACGATTCGCTCACCTCCACGCCTTGCCCCTCAAAGTCCATGGCCTCAAA CAGCACCACGGCCGGGTCCCCGAAGTCCGTCCTGATGACCCGCAGGGAGGTCAGCACCTC GTTATAGCCTCCCCAGTGTGACCAATCAGCGTATTCCCCCTCCTCCAGCAGATACTGGTG GCCCCGGAAGCCCTCCTTCTCGTAGCCCACCCAGCAGCCCCCAAGAACTCGCAGGGACCC CACAGAGGCCAAGTTGGGGCTCTGGCTGTCCTCTGGCTGCTGAAGGTTGTAGATGTCTCG GCTCACTTCCCAGCTCTGGCCCTGAAAGTCTGGGGCCTCATACACCACGGCCTTGGGCTC ACCTGGCTTCTCCACACTTGGGCAGCCCAATCTCATGGGCTTCAGGGAGCCCACGCTGGG GTCTGATGCACCCCAGGCCTCTGAGTTGGGGTACTCTCCAGGCTCCAGGATGCAGGGGGT GTTTTTCAAAGAAGGGTTTGGGGTATAGAAGCCACAGTCCTGCGGATACAATGGCAGATG CCACCTGCAGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 447-575, + strand, RNAz p=0.998285 | |
| 454-575, - strand, RNAz p=0.998895 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 447-575, + strand, RNAz p=0.998285 | |
| 454-575, - strand, RNAz p=0.998895 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-148, gnl|bosTau2|chr2 (78186416-78186563) | |
| 1-148, gnl|Hg17|chr1 (26347467-26347614) | |
| 1-148, gnl|Mm7|chr4 (133460308-133460161) | |
| 272-417, gnl|bosTau2|chr2 (78187098-78187244) | |
| 272-417, gnl|canFam2|chr2 (76578005-76577876) | |
| 272-417, gnl|danRer3|chr9 (3808859-3808965) | |
| 272-417, gnl|echTel1|scaffold_239355 (2544-2416) | |
| 272-417, gnl|fr1|chrUn (80994550-80994669) | |
| 272-417, gnl|galGal2|chr23 (189694-189570) | |
| 272-417, gnl|hg17|chr1 (26348141-26348270) | |
| 272-417, gnl|Hg17|chr1 (26348168-26348313) | |
| 272-417, gnl|mm7|chr4 (133459693-133459561) | |
| 272-417, gnl|Mm7|chr4 (133459661-133459516) | |
| 272-417, gnl|monDom2|scaffold_91 (3896089-3896233) | |
| 272-417, gnl|oryCun1|scaffold_200570 (77821-77950) | |
| 272-417, gnl|panTro1|chr1 (27036648-27036777) | |
| 272-417, gnl|rheMac2|chr1 (28958690-28958819) | |
| 272-417, gnl|rn3|chr5 (152840522-152840390) | |
| 272-417, gnl|tetNig1|chr14 (3942411-3942290) | |
| 447-575, gnl|bosTau2|chr2 (78187856-78187983) | |
| 447-575, gnl|canFam2|chr2 (76577236-76577131) | |
| 447-575, gnl|danRer3|chr9 (3809257-3809353) | |
| 447-575, gnl|dasNov1|scaffold_90247 (1063-963) | |
| 447-575, gnl|echTel1|scaffold_105977 (517-411) | |
| 447-575, gnl|fr1|chrUn (124668191-124668075) | |
| 447-575, gnl|hg17|chr1 (26348962-26349078) | |
| 447-575, gnl|Hg17|chr1 (26348983-26349110) | |
| 447-575, gnl|mm7|chr4 (133458919-133458803) | |
| 447-575, gnl|Mm7|chr4 (133458896-133458769) | |
| 447-575, gnl|monDom2|scaffold_91 (3897469-3897596) | |
| 447-575, gnl|oryCun1|scaffold_202928 (68568-68676) | |
| 447-575, gnl|panTro1|chr1 (27037546-27037662) | |
| 447-575, gnl|rheMac2|chr1 (28959519-28959635) | |
| 447-575, gnl|rn3|chr5 (152839760-152839644) | |
| 447-575, gnl|tetNig1|chr21_random (476618-476520) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-148, gnl|bosTau2|chr2 (78186416-78186563) | |
| 1-148, gnl|Hg17|chr1 (26347467-26347614) | |
| 1-148, gnl|Mm7|chr4 (133460308-133460161) | |
| 272-417, gnl|bosTau2|chr2 (78187098-78187244) | |
| 272-417, gnl|canFam2|chr2 (76578005-76577876) | |
| 272-417, gnl|danRer3|chr9 (3808859-3808965) | |
| 272-417, gnl|echTel1|scaffold_239355 (2544-2416) | |
| 272-417, gnl|fr1|chrUn (80994550-80994669) | |
| 272-417, gnl|galGal2|chr23 (189694-189570) | |
| 272-417, gnl|hg17|chr1 (26348141-26348270) | |
| 272-417, gnl|Hg17|chr1 (26348168-26348313) | |
| 272-417, gnl|mm7|chr4 (133459693-133459561) | |
| 272-417, gnl|Mm7|chr4 (133459661-133459516) | |
| 272-417, gnl|monDom2|scaffold_91 (3896089-3896233) | |
| 272-417, gnl|oryCun1|scaffold_200570 (77821-77950) | |
| 272-417, gnl|panTro1|chr1 (27036648-27036777) | |
| 272-417, gnl|rheMac2|chr1 (28958690-28958819) | |
| 272-417, gnl|rn3|chr5 (152840522-152840390) | |
| 272-417, gnl|tetNig1|chr14 (3942411-3942290) | |
| 447-575, gnl|bosTau2|chr2 (78187856-78187983) | |
| 447-575, gnl|canFam2|chr2 (76577236-76577131) | |
| 447-575, gnl|danRer3|chr9 (3809257-3809353) | |
| 447-575, gnl|dasNov1|scaffold_90247 (1063-963) | |
| 447-575, gnl|echTel1|scaffold_105977 (517-411) | |
| 447-575, gnl|fr1|chrUn (124668191-124668075) | |
| 447-575, gnl|hg17|chr1 (26348962-26349078) | |
| 447-575, gnl|Hg17|chr1 (26348983-26349110) | |
| 447-575, gnl|mm7|chr4 (133458919-133458803) | |
| 447-575, gnl|Mm7|chr4 (133458896-133458769) | |
| 447-575, gnl|monDom2|scaffold_91 (3897469-3897596) | |
| 447-575, gnl|oryCun1|scaffold_202928 (68568-68676) | |
| 447-575, gnl|panTro1|chr1 (27037546-27037662) | |
| 447-575, gnl|rheMac2|chr1 (28959519-28959635) | |
| 447-575, gnl|rn3|chr5 (152839760-152839644) | |
| 447-575, gnl|tetNig1|chr21_random (476618-476520) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |