Non-Coding RNA Search

Ss1.1-rplac_17139.5

Sequence:


               
               CCAGAGGTGTCCCGAGCTGTCATCCACATTGACGAGCAGAGCGGAAAGGAGAAGTACAAG
CTCCTGGTGGAGGGTGACAACCTGCGGGCAGTCATGGCCACCCATGGGGTGAAGGGCACC
CAGACCACCTCCAACAACACCTATGAGGTGGAGAAAACTCTGGGCATCGAAGCTGCCCGG
ACGACCATCATCAACGAAATCCAGTACACGATGGTCAACCACGGCATGAGCATTGACCGG
CGGCATGTGATGCTGCTCTCTGACCTTATGACCTACAAGGGTGAAGTCCTGGGCATTACT
AGATTTGGCCTGGCCAAGATGAAGGAGAGCGTGCTGATGCTGGCCTCCTTTGAGAAGACC
GCCGACCACCTCTTTGACGCTGCCTATTTTGGGCAGAAGGACTCCGTGTGTGGGGTGTCT
GAATGCATCATCATGGGGATCCCCATGAACATCGGAACCGGGCTCTTCAAGCTGCTCCAC
AAGGCCAACAGGGACCCGAGCCCTCCTAGGAGGCCTCTGATCTTCGACACAGATGAATTC
CACATCCCTCTTGTCACATAGTCCAGGGAAGAGGGGACTTTTCCTGACCTTGGCTCCTTG
TCCTGTCTGGGAAAGGGGCTCGAGGCCAGCAGCTGACTCGTGAGCTTTGTGCTCCCCAGG
ACTGAGGCCCCACCATCCCACCATGCCAGTGGGCAGAGAAGATGCCACTGTCCCCGGAGA
CAACTCACCTAGTGACCCCGACCACAACGGTGGAAAGAACTAGGGTTTGTCTGTTTGTTG
AAATTTTAATCTATGGACAGCTCAGCACCTCCTGCCCACTCCACCTCCCTGGACAGGCAA
GGAGGCCCCAGCCAGGCGTCTCTGCTCCTTCTAACCTCTAGTCCATCCGTCTGCTCTCAG
AGGTGCTCCACCCTGACCAGGAGCCAGGTCTAGGCCCCAAGACCAAGGCACGATCTTGGT
TCTTCTTTTCCTTGCTCATGCTGGAATTTCCCAATGTGATATGCTAATGTAAATATTGTT
ACTACTATTTATTGTTCAGTTCAAAGAATTTGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAGGTGTCCCGAGCTGTCATCCACATTGACGAGCAGAGCGGAAAGGAGAAGTACAAG
CTCCTGGTGGAGGGTGACAACCTGCGGGCAGTCATGGCCACCCATGGGGTGAAGGGCACC
CAGACCACCTCCAACAACACCTATGAGGTGGAGAAAACTCTGGGCATCGAAGCTGCCCGG
ACGACCATCATCAACGAAATCCAGTACACGATGGTCAACCACGGCATGAGCATTGACCGG
CGGCATGTGATGCTGCTCTCTGACCTTATGACCTACAAGGGTGAAGTCCTGGGCATTACT
AGATTTGGCCTGGCCAAGATGAAGGAGAGCGTGCTGATGCTGGCCTCCTTTGAGAAGACC
GCCGACCACCTCTTTGACGCTGCCTATTTTGGGCAGAAGGACTCCGTGTGTGGGGTGTCT
GAATGCATCATCATGGGGATCCCCATGAACATCGGAACCGGGCTCTTCAAGCTGCTCCAC
AAGGCCAACAGGGACCCGAGCCCTCCTAGGAGGCCTCTGATCTTCGACACAGATGAATTC
CACATCCCTCTTGTCACATAGTCCAGGGAAGAGGGGACTTTTCCTGACCTTGGCTCCTTG
TCCTGTCTGGGAAAGGGGCTCGAGGCCAGCAGCTGACTCGTGAGCTTTGTGCTCCCCAGG
ACTGAGGCCCCACCATCCCACCATGCCAGTGGGCAGAGAAGATGCCACTGTCCCCGGAGA
CAACTCACCTAGTGACCCCGACCACAACGGTGGAAAGAACTAGGGTTTGTCTGTTTGTTG
AAATTTTAATCTATGGACAGCTCAGCACCTCCTGCCCACTCCACCTCCCTGGACAGGCAA
GGAGGCCCCAGCCAGGCGTCTCTGCTCCTTCTAACCTCTAGTCCATCCGTCTGCTCTCAG
AGGTGCTCCACCCTGACCAGGAGCCAGGTCTAGGCCCCAAGACCAAGGCACGATCTTGGT
TCTTCTTTTCCTTGCTCATGCTGGAATTTCCCAATGTGATATGCTAATGTAAATATTGTT
ACTACTATTTATTGTTCAGTTCAAAGAATTTGGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31417307|gb|AAH14399.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31417307|gb|AAH14399.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               412-531, - strand, RNAz p=0.649943

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               412-531, - strand, RNAz p=0.649943

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-149, gnl|bosTau2|chr28 (26644936-26644788)
               

               
               1-149, gnl|canFam2|chr4 (31049557-31049727)
               

               
               1-149, gnl|danRer3|chr18 (49476595-49476764)
               

               
               1-149, gnl|dasNov1|scaffold_1843 (95919-95749)
               

               
               1-149, gnl|echTel1|scaffold_288671 (37166-36996)
               

               
               1-149, gnl|fr1|chrUn (20376463-20376632)
               

               
               1-149, gnl|galGal2|chr6 (12437415-12437245)
               

               
               1-149, gnl|hg17|chr10 (79411916-79412086)
               

               
               1-149, gnl|Hg17|chr10 (79412064-79411916)
               

               
               1-149, gnl|mm7|chr14 (22120364-22120534)
               

               
               1-149, gnl|Mm7|chr14 (22120512-22120364)
               

               
               1-149, gnl|monDom2|scaffold_14 (6623066-6623236)
               

               
               1-149, gnl|oryCun1|scaffold_207479 (108807-108637)
               

               
               1-149, gnl|panTro1|chr8 (80696521-80696694)
               

               
               1-149, gnl|rheMac2|chr9 (59063264-59063094)
               

               
               1-149, gnl|rn3|chr16 (8199-8369)
               

               
               1-149, gnl|tetNig1|chr2_random (994474-994305)
               

               
               1-149, gnl|xenTro1|scaffold_249 (1270041-1270211)
               


               
               412-1056, gnl|bosTau2|chr28 (26641318-26640664)
               

               
               412-1056, gnl|Hg17|chr10 (79407391-79406724)
               

               
               412-1056, gnl|Mm7|chr14 (22117078-22116541)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-149, gnl|bosTau2|chr28 (26644936-26644788)
               

               
               1-149, gnl|canFam2|chr4 (31049557-31049727)
               

               
               1-149, gnl|danRer3|chr18 (49476595-49476764)
               

               
               1-149, gnl|dasNov1|scaffold_1843 (95919-95749)
               

               
               1-149, gnl|echTel1|scaffold_288671 (37166-36996)
               

               
               1-149, gnl|fr1|chrUn (20376463-20376632)
               

               
               1-149, gnl|galGal2|chr6 (12437415-12437245)
               

               
               1-149, gnl|hg17|chr10 (79411916-79412086)
               

               
               1-149, gnl|Hg17|chr10 (79412064-79411916)
               

               
               1-149, gnl|mm7|chr14 (22120364-22120534)
               

               
               1-149, gnl|Mm7|chr14 (22120512-22120364)
               

               
               1-149, gnl|monDom2|scaffold_14 (6623066-6623236)
               

               
               1-149, gnl|oryCun1|scaffold_207479 (108807-108637)
               

               
               1-149, gnl|panTro1|chr8 (80696521-80696694)
               

               
               1-149, gnl|rheMac2|chr9 (59063264-59063094)
               

               
               1-149, gnl|rn3|chr16 (8199-8369)
               

               
               1-149, gnl|tetNig1|chr2_random (994474-994305)
               

               
               1-149, gnl|xenTro1|scaffold_249 (1270041-1270211)
               


               
               412-1056, gnl|bosTau2|chr28 (26641318-26640664)
               

               
               412-1056, gnl|Hg17|chr10 (79407391-79406724)
               

               
               412-1056, gnl|Mm7|chr14 (22117078-22116541)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	1-149, gnl\|bosTau2\|chr28 (26644936-26644788)
	1-149, gnl\|canFam2\|chr4 (31049557-31049727)
	1-149, gnl\|danRer3\|chr18 (49476595-49476764)
	1-149, gnl\|dasNov1\|scaffold_1843 (95919-95749)
	1-149, gnl\|echTel1\|scaffold_288671 (37166-36996)
	1-149, gnl\|fr1\|chrUn (20376463-20376632)
	1-149, gnl\|galGal2\|chr6 (12437415-12437245)
	1-149, gnl\|hg17\|chr10 (79411916-79412086)
	1-149, gnl\|Hg17\|chr10 (79412064-79411916)
	1-149, gnl\|mm7\|chr14 (22120364-22120534)
	1-149, gnl\|Mm7\|chr14 (22120512-22120364)
	1-149, gnl\|monDom2\|scaffold_14 (6623066-6623236)
	1-149, gnl\|oryCun1\|scaffold_207479 (108807-108637)
	1-149, gnl\|panTro1\|chr8 (80696521-80696694)
	1-149, gnl\|rheMac2\|chr9 (59063264-59063094)
	1-149, gnl\|rn3\|chr16 (8199-8369)
	1-149, gnl\|tetNig1\|chr2_random (994474-994305)
	1-149, gnl\|xenTro1\|scaffold_249 (1270041-1270211)

	412-1056, gnl\|bosTau2\|chr28 (26641318-26640664)
	412-1056, gnl\|Hg17\|chr10 (79407391-79406724)
	412-1056, gnl\|Mm7\|chr14 (22117078-22116541)

	cmu (0.186393)
	fbs (0.175346)
	rec (0.17307)
	fco (0.157208)
	pty (0.142714)
	pla (0.133672)
	cly (0.120642)
	jej (0.0989218)