Ss1.1-rplac_1721.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCATCTTCGACTGCGTCTACACGGTGCAGAGTGACGTCTGGTCCTACGGCATCCTGCT CTGGGAGATCTTCTCGCTGGGGCTGAACCCCTACCCTGGCATCCTGGTGAACAGCAAGTT CTACAAGCTGGTGAAGGACGGGTACCAGATGGCCCAGCCTGCGTTCGCCCCCAAGAACAT ATACAGCATCATGCAGGCCTGCTGGGCCCTGGAGCCGACGCGCAGACCCACCTTCCAGCA GATCTGCTCCCTCCTTCAGGAGCAGAGCCACGGCGACCAGAGAGCGCGGGACTACAGCAA CCTGCCGAGCAGCAGCAGCAGCAGCAGCGAGCCCGAGGAGGGGAGCTCCGGCGAGCACCT GGCCTGCTGCGAGCAGGGGGATGCGGCCCAGCCCCTGCTGCAACCCAACACCTACCAATT CTGCTGAGGGGGTGGCCTACCCTCCTCCCTGGACGGGTTACCATGGGCAGAGCACAGACT CTGCCCTGGGCCTTTCACTCAACAGCCTGGCCCAGCTCCCGAAACTCAGGAATGTGGGGT CCAGGAGGTCGGGGGACCCCACTTCCAGGACCTGGGCCGTCACTGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCATCTTCGACTGCGTCTACACGGTGCAGAGTGACGTCTGGTCCTACGGCATCCTGCT CTGGGAGATCTTCTCGCTGGGGCTGAACCCCTACCCTGGCATCCTGGTGAACAGCAAGTT CTACAAGCTGGTGAAGGACGGGTACCAGATGGCCCAGCCTGCGTTCGCCCCCAAGAACAT ATACAGCATCATGCAGGCCTGCTGGGCCCTGGAGCCGACGCGCAGACCCACCTTCCAGCA GATCTGCTCCCTCCTTCAGGAGCAGAGCCACGGCGACCAGAGAGCGCGGGACTACAGCAA CCTGCCGAGCAGCAGCAGCAGCAGCAGCGAGCCCGAGGAGGGGAGCTCCGGCGAGCACCT GGCCTGCTGCGAGCAGGGGGATGCGGCCCAGCCCCTGCTGCAACCCAACACCTACCAATT CTGCTGAGGGGGTGGCCTACCCTCCTCCCTGGACGGGTTACCATGGGCAGAGCACAGACT CTGCCCTGGGCCTTTCACTCAACAGCCTGGCCCAGCTCCCGAAACTCAGGAATGTGGGGT CCAGGAGGTCGGGGGACCCCACTTCCAGGACCTGGGCCGTCACTGCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 318-408, - strand, RNAz p=0.991983 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 318-408, - strand, RNAz p=0.991983 |
| Aligned organism(s): 9 entry(ies) | More info |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
| 80-183, gnl|bosTau2|chr7 (41896357-41896254) | |
| 80-183, gnl|Hg17|chr5 (149415093-149414990) | |
| 80-183, gnl|Mm7|chr18 (61519141-61519244) | |
| 289-437, gnl|bosTau2|chr7 (41895217-41895069) | |
| 289-437, gnl|Hg17|chr5 (149413981-149413815) | |
| 289-437, gnl|Mm7|chr18 (61519742-61519929) | |
| 441-588, gnl|bosTau2|chr7 (41895032-41894880) | |
| 441-588, gnl|Hg17|chr5 (149413779-149413626) | |
| 441-588, gnl|Mm7|chr18 (61519967-61520106) |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 80-183, gnl|bosTau2|chr7 (41896357-41896254) | |
| 80-183, gnl|Hg17|chr5 (149415093-149414990) | |
| 80-183, gnl|Mm7|chr18 (61519141-61519244) | |
| 289-437, gnl|bosTau2|chr7 (41895217-41895069) | |
| 289-437, gnl|Hg17|chr5 (149413981-149413815) | |
| 289-437, gnl|Mm7|chr18 (61519742-61519929) | |
| 441-588, gnl|bosTau2|chr7 (41895032-41894880) | |
| 441-588, gnl|Hg17|chr5 (149413779-149413626) | |
| 441-588, gnl|Mm7|chr18 (61519967-61520106) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fty (0.17584) | |
| csp (0.161186) | |
| pla (0.133672) | |
| cly (0.120642) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| csp (0.161186) | |
| pla (0.133672) | |
| cly (0.120642) | |
| clu (0.119646) | |
| jca (0.11396) |