Non-Coding RNA Search

Ss1.1-rplac_17430.5

Sequence:


               
               GAGGGCGGCGGCAGTGCAGCTGAGCTGGGCTGGAACCACCCCCTTGGAGTTCCGTCAGCC
TGCACCCTAGGAGGATACCCCGGAAGCCCAGCTAGGGCCTAACTTCAGCCCCATGCGGCT
CACCCGCTGCCAGGCTGCTCTGGCAGCCGCCATCACGCTCAACCTCCTGGTCCTGCTTTA
TGTTTCGTGGCTGCAGCACCAGCCCAGGAACTCCCGGGCCAGGGGCTCCCGCCGTGGATC
TACCTCCGGTCCGCGCGTCACCGTCCTGGTGCGGGAGTTCGAGGCCTTTGACAACGCGGT
GCCAGAGCTAGTGGATTCCTTCCTGCAGCAGGACCCAGCCCAGCCCGTGGTGGTGGCTTC
GGACACACTCCCCTATCCGCCCCTGGCCCTGCCGCGCATCTCCAACGTTCGCCTGGCGCT
GCTCCAGCCTGCCCTGGACCGGCCCGCCGCAGCCTCGCGCCCCGAGACCTACGTGGCCAC
CGAGTTCGTGGCCCTGGTGCCCGACGGGGCAAGGGCCGAGGCACCCGGCCAGCTGGAGCG
CATGGTGGAAGTGCTCCGAGCCGGAGGCGCACGCCTGGTGGCCGCTCCCGTCGCTTCGGC
CAACCCTGCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGCGGCGGCAGTGCAGCTGAGCTGGGCTGGAACCACCCCCTTGGAGTTCCGTCAGCC
TGCACCCTAGGAGGATACCCCGGAAGCCCAGCTAGGGCCTAACTTCAGCCCCATGCGGCT
CACCCGCTGCCAGGCTGCTCTGGCAGCCGCCATCACGCTCAACCTCCTGGTCCTGCTTTA
TGTTTCGTGGCTGCAGCACCAGCCCAGGAACTCCCGGGCCAGGGGCTCCCGCCGTGGATC
TACCTCCGGTCCGCGCGTCACCGTCCTGGTGCGGGAGTTCGAGGCCTTTGACAACGCGGT
GCCAGAGCTAGTGGATTCCTTCCTGCAGCAGGACCCAGCCCAGCCCGTGGTGGTGGCTTC
GGACACACTCCCCTATCCGCCCCTGGCCCTGCCGCGCATCTCCAACGTTCGCCTGGCGCT
GCTCCAGCCTGCCCTGGACCGGCCCGCCGCAGCCTCGCGCCCCGAGACCTACGTGGCCAC
CGAGTTCGTGGCCCTGGTGCCCGACGGGGCAAGGGCCGAGGCACCCGGCCAGCTGGAGCG
CATGGTGGAAGTGCTCCGAGCCGGAGGCGCACGCCTGGTGGCCGCTCCCGTCGCTTCGGC
CAACCCTGCTCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               72-228, - strand, RNAz p=0.981353
               

               
               469-588, + strand, RNAz p=0.8595

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-228, - strand, RNAz p=0.981353
               

               
               469-588, + strand, RNAz p=0.8595

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               72-612, gnl|bosTau2|chr18 (49696853-49696313)
               

               
               72-612, gnl|Hg17|chr19 (51950507-51951047)
               

               
               72-612, gnl|Mm7|chr7 (14575603-14575060)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-612, gnl|bosTau2|chr18 (49696853-49696313)
               

               
               72-612, gnl|Hg17|chr19 (51950507-51951047)
               

               
               72-612, gnl|Mm7|chr7 (14575603-14575060)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	72-228, - strand, RNAz p=0.981353
	469-588, + strand, RNAz p=0.8595

	72-612, gnl\|bosTau2\|chr18 (49696853-49696313)
	72-612, gnl\|Hg17\|chr19 (51950507-51951047)
	72-612, gnl\|Mm7\|chr7 (14575603-14575060)