Non-Coding RNA Search

Ss1.1-rplac_17532.5

Sequence:


               
               TGTTGAGAAACAGCACTCAAGTCTCTTCCCTTTTTGGAGAGGAGCAGCAGTGAGCACAGG
ATATTGAGACCTGGGAGGCCAGACAAGAACTTGAGCTTGTTTGCTAACTAATCGGATCCA
GGGAGGTGTAAATTCAGATTAAATTTGGCCATGTTCTCTTTCCCTTCTCAACTGACACAG
TTCTCTGCCATACTTACCTGTCATTTAATGTAGGAAAGGAGGATTTTCTTGCCTTCTCTC
GCATAGTTGTTATCCATGTGAAATGAAAGCCTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGAGAAACAGCACTCAAGTCTCTTCCCTTTTTGGAGAGGAGCAGCAGTGAGCACAGG
ATATTGAGACCTGGGAGGCCAGACAAGAACTTGAGCTTGTTTGCTAACTAATCGGATCCA
GGGAGGTGTAAATTCAGATTAAATTTGGCCATGTTCTCTTTCCCTTCTCAACTGACACAG
TTCTCTGCCATACTTACCTGTCATTTAATGTAGGAAAGGAGGATTTTCTTGCCTTCTCTC
GCATAGTTGTTATCCATGTGAAATGAAAGCCTTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-275, - strand, RNAz p=0.816839

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-275, - strand, RNAz p=0.816839

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               11-275, gnl|bosTau2|chr11 (4048403-4048652)
               

               
               11-275, gnl|canFam2|chr31 (20382517-20382760)
               

               
               11-275, gnl|dasNov1|scaffold_49636 (6248-6032)
               

               
               11-275, gnl|echTel1|scaffold_212887 (845-1079)
               

               
               11-275, gnl|hg17|chr2 (98677863-98678106)
               

               
               11-275, gnl|Hg17|chr2 (98678437-98677887)
               

               
               11-275, gnl|loxAfr1|scaffold_2144 (144968-144719)
               

               
               11-275, gnl|mm7|chr1 (37668953-37669137)
               

               
               11-275, gnl|panTro1|chr12 (101388218-101388466)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-275, gnl|bosTau2|chr11 (4048403-4048652)
               

               
               11-275, gnl|canFam2|chr31 (20382517-20382760)
               

               
               11-275, gnl|dasNov1|scaffold_49636 (6248-6032)
               

               
               11-275, gnl|echTel1|scaffold_212887 (845-1079)
               

               
               11-275, gnl|hg17|chr2 (98677863-98678106)
               

               
               11-275, gnl|Hg17|chr2 (98678437-98677887)
               

               
               11-275, gnl|loxAfr1|scaffold_2144 (144968-144719)
               

               
               11-275, gnl|mm7|chr1 (37668953-37669137)
               

               
               11-275, gnl|panTro1|chr12 (101388218-101388466)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	11-275, gnl\|bosTau2\|chr11 (4048403-4048652)
	11-275, gnl\|canFam2\|chr31 (20382517-20382760)
	11-275, gnl\|dasNov1\|scaffold_49636 (6248-6032)
	11-275, gnl\|echTel1\|scaffold_212887 (845-1079)
	11-275, gnl\|hg17\|chr2 (98677863-98678106)
	11-275, gnl\|Hg17\|chr2 (98678437-98677887)
	11-275, gnl\|loxAfr1\|scaffold_2144 (144968-144719)
	11-275, gnl\|mm7\|chr1 (37668953-37669137)
	11-275, gnl\|panTro1\|chr12 (101388218-101388466)