Ss1.1-rplac_17620.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATTTTTACATGAGAAAGTCTGACCAGAAGGAAACATCTGTTCAGAAGCTGTTTAGTAAG CTGCCAATCACTGGGACTCCTGGGTAGAGAATGAAGTTAGTTAACCTTTGGGAAAGAACT GGTATGCTCCCTTAAATATTAGCTGCTGCCCACTCTCTGGCAGTGAATTGGACACTTTAA TGGGTTGTGAATTAAATATTTTTGGCCTCTGGCCTGCTCCTTTTGAGATGGGGTGACAGT TTCCTTGTCAACTTGGTCAAAAAATCAAGGTGAGCTTGTTGGCTTCCTTTTTTGGCTGCC CCACAGCATATGGAGTTCCCGGGCCAGGCATCAAATCTGAGCCGCAGTTGCTACTTACAC TGCACAGCAACCCTGCATCCTTAACCCACCGCACCAGGAACCTGTGTCCCTGCGTTCCAG AGATGCCACCAATCCCTTTGGACCACAGCAGGAACTGCCGATGGGTCGTCTTTTGTAGGG ATGCTCCGGCCATCACTGGAGATTTATATGGAGTATAGTTTATTTGCAGGTTGTACGAGG GCACTACAAGGGGCAGCAGATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCAT CTACATTGAACGAGTGCAGCGGGAGAAGGCTAATGGCACAACTGTCCATGTGGGCATTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATTTTTACATGAGAAAGTCTGACCAGAAGGAAACATCTGTTCAGAAGCTGTTTAGTAAG CTGCCAATCACTGGGACTCCTGGGTAGAGAATGAAGTTAGTTAACCTTTGGGAAAGAACT GGTATGCTCCCTTAAATATTAGCTGCTGCCCACTCTCTGGCAGTGAATTGGACACTTTAA TGGGTTGTGAATTAAATATTTTTGGCCTCTGGCCTGCTCCTTTTGAGATGGGGTGACAGT TTCCTTGTCAACTTGGTCAAAAAATCAAGGTGAGCTTGTTGGCTTCCTTTTTTGGCTGCC CCACAGCATATGGAGTTCCCGGGCCAGGCATCAAATCTGAGCCGCAGTTGCTACTTACAC TGCACAGCAACCCTGCATCCTTAACCCACCGCACCAGGAACCTGTGTCCCTGCGTTCCAG AGATGCCACCAATCCCTTTGGACCACAGCAGGAACTGCCGATGGGTCGTCTTTTGTAGGG ATGCTCCGGCCATCACTGGAGATTTATATGGAGTATAGTTTATTTGCAGGTTGTACGAGG GCACTACAAGGGGCAGCAGATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCAT CTACATTGAACGAGTGCAGCGGGAGAAGGCTAATGGCACAACTGTCCATGTGGGCATTCA |
| Aligned organism(s): 78 entry(ies) | More info |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
| 527-660, gnl|bosTau2|chr11 (30063091-30062958) | |
| 527-660, gnl|canFam2|chr20 (8341165-8341305) | |
| 527-660, gnl|canFam2|chr20 (8341165-8341455) | |
| 527-660, gnl|canFam2|chr20 (8341172-8341312) | |
| 527-660, gnl|canFam2|chr20 (8341166-8341305) | |
| 527-660, gnl|canFam2|chr9 (41272925-41272615) | |
| 527-660, gnl|danRer3|chrNA (27973688-27973826) | |
| 527-660, gnl|danRer3|chrNA (27973688-27974047) | |
| 527-660, gnl|danRer3|chrNA (27973691-27973851) | |
| 527-660, gnl|danRer3|chrNA (27973693-27974082) | |
| 527-660, gnl|danRer3|chrNA (27973688-27973887) | |
| 527-660, gnl|dasNov1|scaffold_137884 (1074-766) | |
| 527-660, gnl|dasNov1|scaffold_238981 (834-974) | |
| 527-660, gnl|dasNov1|scaffold_4047 (58542-58682) | |
| 527-660, gnl|dasNov1|scaffold_65333 (2582-2292) | |
| 527-660, gnl|dasNov1|scaffold_65333 (2581-2442) | |
| 527-660, gnl|echTel1|scaffold_77814 (2028-2168) | |
| 527-660, gnl|echTel1|scaffold_77814 (2031-2311) | |
| 527-660, gnl|echTel1|scaffold_77814 (2051-2175) | |
| 527-660, gnl|echTel1|scaffold_77814 (2035-2343) | |
| 527-660, gnl|echTel1|scaffold_77814 (2029-2168) | |
| 527-660, gnl|fr1|chrUn (141373812-141373952) | |
| 527-660, gnl|fr1|chrUn (141373810-141374176) | |
| 527-660, gnl|fr1|chrUn (141373817-141374021) | |
| 527-660, gnl|fr1|chrUn (141373838-141374206) | |
| 527-660, gnl|fr1|chrUn (141373813-141374022) | |
| 527-660, gnl|galGal2|chr13 (8234274-8234137) | |
| 527-660, gnl|galGal2|chr13 (8234279-8234137) | |
| 527-660, gnl|galGal2|chr13 (8234275-8234137) | |
| 527-660, gnl|hg17|chr10 (5336520-5336659) | |
| 527-660, gnl|hg17|chr13 (24176611-24176935) | |
| 527-660, gnl|hg17|chr14 (22233275-22233415) | |
| 527-660, gnl|hg17|chr16 (1953835-1954105) | |
| 527-660, gnl|hg17|chr18 (72675524-72675673) | |
| 527-660, gnl|Hg17|chr5 (55836491-55836358) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5671-5808) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5657-5958) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5674-5815) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5675-5984) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5670-5808) | |
| 527-660, gnl|mm7|chr19 (28703372-28703511) | |
| 527-660, gnl|mm7|chr5 (3242748-3242608) | |
| 527-660, gnl|mm7|chr5 (3242748-3242458) | |
| 527-660, gnl|mm7|chr5 (3242741-3242601) | |
| 527-660, gnl|mm7|chr5 (3242741-3242433) | |
| 527-660, gnl|Mm7|chr5 (3242602-3242735) | |
| 527-660, gnl|monDom2|scaffold_5 (109366839-109366699) | |
| 527-660, gnl|monDom2|scaffold_5 (109366836-109366549) | |
| 527-660, gnl|monDom2|scaffold_5 (109366816-109366692) | |
| 527-660, gnl|monDom2|scaffold_5 (109366832-109366524) | |
| 527-660, gnl|monDom2|scaffold_5 (109366838-109366699) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70197-70337) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70197-70486) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70204-70344) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70204-70511) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70198-70337) | |
| 527-660, gnl|panTro1|chr14 (23345373-23345698) | |
| 527-660, gnl|panTro1|chr15 (21157031-21157171) | |
| 527-660, gnl|panTro1|chr17 (69838787-69838936) | |
| 527-660, gnl|panTro1|chr18_random (6659405-6659135) | |
| 527-660, gnl|panTro1|chr8 (5465645-5465784) | |
| 527-660, gnl|rheMac2|chr17 (4694328-4694653) | |
| 527-660, gnl|rheMac2|chr18 (70280573-70280713) | |
| 527-660, gnl|rheMac2|chr20 (1949309-1949579) | |
| 527-660, gnl|rheMac2|chr7 (85483830-85483970) | |
| 527-660, gnl|rheMac2|chr9 (5600378-5600513) | |
| 527-660, gnl|rn3|chr1 (29724454-29724762) | |
| 527-660, gnl|rn3|chr11 (51785612-51785902) | |
| 527-660, gnl|rn3|chr15 (35868462-35868327) | |
| 527-660, gnl|rn3|chr7 (119040119-119040259) | |
| 527-660, gnl|rn3|chr7 (119040120-119040259) | |
| 527-660, gnl|tetNig1|chr1 (2883413-2883553) | |
| 527-660, gnl|tetNig1|chr1 (2883418-2883597) | |
| 527-660, gnl|tetNig1|chr1 (2883439-2883804) | |
| 527-660, gnl|tetNig1|chr1 (2883414-2883614) | |
| 527-660, gnl|xenTro1|scaffold_21 (498244-498107) | |
| 527-660, gnl|xenTro1|scaffold_21 (498242-498100) | |
| 527-660, gnl|xenTro1|scaffold_21 (498245-498107) |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 527-660, gnl|bosTau2|chr11 (30063091-30062958) | |
| 527-660, gnl|canFam2|chr20 (8341165-8341305) | |
| 527-660, gnl|canFam2|chr20 (8341165-8341455) | |
| 527-660, gnl|canFam2|chr20 (8341172-8341312) | |
| 527-660, gnl|canFam2|chr20 (8341166-8341305) | |
| 527-660, gnl|canFam2|chr9 (41272925-41272615) | |
| 527-660, gnl|danRer3|chrNA (27973688-27973826) | |
| 527-660, gnl|danRer3|chrNA (27973688-27974047) | |
| 527-660, gnl|danRer3|chrNA (27973691-27973851) | |
| 527-660, gnl|danRer3|chrNA (27973693-27974082) | |
| 527-660, gnl|danRer3|chrNA (27973688-27973887) | |
| 527-660, gnl|dasNov1|scaffold_137884 (1074-766) | |
| 527-660, gnl|dasNov1|scaffold_238981 (834-974) | |
| 527-660, gnl|dasNov1|scaffold_4047 (58542-58682) | |
| 527-660, gnl|dasNov1|scaffold_65333 (2582-2292) | |
| 527-660, gnl|dasNov1|scaffold_65333 (2581-2442) | |
| 527-660, gnl|echTel1|scaffold_77814 (2028-2168) | |
| 527-660, gnl|echTel1|scaffold_77814 (2031-2311) | |
| 527-660, gnl|echTel1|scaffold_77814 (2051-2175) | |
| 527-660, gnl|echTel1|scaffold_77814 (2035-2343) | |
| 527-660, gnl|echTel1|scaffold_77814 (2029-2168) | |
| 527-660, gnl|fr1|chrUn (141373812-141373952) | |
| 527-660, gnl|fr1|chrUn (141373810-141374176) | |
| 527-660, gnl|fr1|chrUn (141373817-141374021) | |
| 527-660, gnl|fr1|chrUn (141373838-141374206) | |
| 527-660, gnl|fr1|chrUn (141373813-141374022) | |
| 527-660, gnl|galGal2|chr13 (8234274-8234137) | |
| 527-660, gnl|galGal2|chr13 (8234279-8234137) | |
| 527-660, gnl|galGal2|chr13 (8234275-8234137) | |
| 527-660, gnl|hg17|chr10 (5336520-5336659) | |
| 527-660, gnl|hg17|chr13 (24176611-24176935) | |
| 527-660, gnl|hg17|chr14 (22233275-22233415) | |
| 527-660, gnl|hg17|chr16 (1953835-1954105) | |
| 527-660, gnl|hg17|chr18 (72675524-72675673) | |
| 527-660, gnl|Hg17|chr5 (55836491-55836358) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5671-5808) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5657-5958) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5674-5815) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5675-5984) | |
| 527-660, gnl|loxAfr1|scaffold_64516 (5670-5808) | |
| 527-660, gnl|mm7|chr19 (28703372-28703511) | |
| 527-660, gnl|mm7|chr5 (3242748-3242608) | |
| 527-660, gnl|mm7|chr5 (3242748-3242458) | |
| 527-660, gnl|mm7|chr5 (3242741-3242601) | |
| 527-660, gnl|mm7|chr5 (3242741-3242433) | |
| 527-660, gnl|Mm7|chr5 (3242602-3242735) | |
| 527-660, gnl|monDom2|scaffold_5 (109366839-109366699) | |
| 527-660, gnl|monDom2|scaffold_5 (109366836-109366549) | |
| 527-660, gnl|monDom2|scaffold_5 (109366816-109366692) | |
| 527-660, gnl|monDom2|scaffold_5 (109366832-109366524) | |
| 527-660, gnl|monDom2|scaffold_5 (109366838-109366699) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70197-70337) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70197-70486) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70204-70344) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70204-70511) | |
| 527-660, gnl|oryCun1|scaffold_208682 (70198-70337) | |
| 527-660, gnl|panTro1|chr14 (23345373-23345698) | |
| 527-660, gnl|panTro1|chr15 (21157031-21157171) | |
| 527-660, gnl|panTro1|chr17 (69838787-69838936) | |
| 527-660, gnl|panTro1|chr18_random (6659405-6659135) | |
| 527-660, gnl|panTro1|chr8 (5465645-5465784) | |
| 527-660, gnl|rheMac2|chr17 (4694328-4694653) | |
| 527-660, gnl|rheMac2|chr18 (70280573-70280713) | |
| 527-660, gnl|rheMac2|chr20 (1949309-1949579) | |
| 527-660, gnl|rheMac2|chr7 (85483830-85483970) | |
| 527-660, gnl|rheMac2|chr9 (5600378-5600513) | |
| 527-660, gnl|rn3|chr1 (29724454-29724762) | |
| 527-660, gnl|rn3|chr11 (51785612-51785902) | |
| 527-660, gnl|rn3|chr15 (35868462-35868327) | |
| 527-660, gnl|rn3|chr7 (119040119-119040259) | |
| 527-660, gnl|rn3|chr7 (119040120-119040259) | |
| 527-660, gnl|tetNig1|chr1 (2883413-2883553) | |
| 527-660, gnl|tetNig1|chr1 (2883418-2883597) | |
| 527-660, gnl|tetNig1|chr1 (2883439-2883804) | |
| 527-660, gnl|tetNig1|chr1 (2883414-2883614) | |
| 527-660, gnl|xenTro1|scaffold_21 (498244-498107) | |
| 527-660, gnl|xenTro1|scaffold_21 (498242-498100) | |
| 527-660, gnl|xenTro1|scaffold_21 (498245-498107) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| pla (0.133672) | |
| bla (0.124347) |