Non-Coding RNA Search

Ss1.1-rplac_17643.5

Sequence:


               
               TTCGCTGCCGCCGCGGCAGGGGTACGGGTTTCTCTGGCCGGCCAACTCAGCTGCCCTGGA
GGATTCGTGCATGATTGATAAGGTACCTCTGATGAAGCCATGACAAGGTGGGCACGAGTT
ACGACCACACAGAACAGAAGACCCTTCCCTGCAACATCATGGGAGGACATGAAGAAGGGA
TCCCTTGAGGGGAAAAGCCAAAGCCCACCAAGGAGTAAACAACTTGAAGCCAACAGGCTG
TCTCTTAAAAAGGACTCACCTCAAGCAAAACACAAAAAGAATAAAAAGAAAAAGGAGTAT
TTAAATGAAGATGTGAATGGATTCATGGAGTACCTAAGACAGAACTCACAGATGGTTCAC
AATGGGGAGGAGATAGCAGACAGTCAGGAAGTAAGGCAAGAAATTGCACTTGCTTTAAAG
AAGGACAGTCGCCGGGAGGGCAGGCGATTAAAACGACAAGCAGCAAAGAAAAATGCAATG
GTATGTTTCCATTGCAGACAACCTGGCCATGGGATTGCAGATTGCCCTGCTGCCCTTGAA
AATCAAGAAATGGGCACTGGAATATGCTATCGGTGTGGATCCACAGAGCACGAAATAACC
AAGTGCAAGGCTCAAGTAGACCCAGCTCTTGGTGAATTTCCTTTTGCAAAATGTTTCGTT
TGTGGGGAAATGGGACATCTATCCAGATCTTGTCCTGATAATCCCAAAGGACTCTATGCT
GATGGTGGTTGCTGCAGACTTTGTGGCTCTGTGGAACATTTTAAGAAAGACTGCCCGGAA
AGTAAGAATTCAGATCAAATGGTCACAGTTGGTCGCTGGGCAAAGGGAATGAGTGCAGAC
TATGAAGAAATTTTGGATGTGCCTAAACCACAGAAACCCAAAACAAAGCTACCTAAAGTT
GTTAACTTTTGATAATGACTGGTACTGTTGTTAGCTGCCACTTCTTTGGTAAACATTCTG
AATTGGGCTTACTTCACAAATTGGAGCTAGACTCTCTCTTGGAGGCGGCTTGTATTATCG
ATATCAGTATAAACTGGGTGGGGTCAGGTTGTTCCCTGAGTTCTGTCCATTGAGGAGTAC
TTCTCCCACTGTTTGGGGAAAATCGCTGAAAAAAAGTATAAAATGTTCAAGTTGGATTCT
CTAAAAGTATATATTTTTAACAGATAAAACTTAGGTGTAACTAAGTGGTTATATACCTGA
TTGTAACAATCACCTTTTTCTTAAAAATTAAATTATGCATTAATATGAACCATCCCTAAA
TATAGGGTAACTGCTTTGTACTTGGAAATGAATTTTTGCCGACATAATTTTCTTCATTCA
AAGTATCAATTTATTATTATATTAGAATTTATAATTGCTATAAAATCTGTATTTTAAAAA
TATTTAATAAAAACGCGTTTGCTATTTATTTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGCTGCCGCCGCGGCAGGGGTACGGGTTTCTCTGGCCGGCCAACTCAGCTGCCCTGGA
GGATTCGTGCATGATTGATAAGGTACCTCTGATGAAGCCATGACAAGGTGGGCACGAGTT
ACGACCACACAGAACAGAAGACCCTTCCCTGCAACATCATGGGAGGACATGAAGAAGGGA
TCCCTTGAGGGGAAAAGCCAAAGCCCACCAAGGAGTAAACAACTTGAAGCCAACAGGCTG
TCTCTTAAAAAGGACTCACCTCAAGCAAAACACAAAAAGAATAAAAAGAAAAAGGAGTAT
TTAAATGAAGATGTGAATGGATTCATGGAGTACCTAAGACAGAACTCACAGATGGTTCAC
AATGGGGAGGAGATAGCAGACAGTCAGGAAGTAAGGCAAGAAATTGCACTTGCTTTAAAG
AAGGACAGTCGCCGGGAGGGCAGGCGATTAAAACGACAAGCAGCAAAGAAAAATGCAATG
GTATGTTTCCATTGCAGACAACCTGGCCATGGGATTGCAGATTGCCCTGCTGCCCTTGAA
AATCAAGAAATGGGCACTGGAATATGCTATCGGTGTGGATCCACAGAGCACGAAATAACC
AAGTGCAAGGCTCAAGTAGACCCAGCTCTTGGTGAATTTCCTTTTGCAAAATGTTTCGTT
TGTGGGGAAATGGGACATCTATCCAGATCTTGTCCTGATAATCCCAAAGGACTCTATGCT
GATGGTGGTTGCTGCAGACTTTGTGGCTCTGTGGAACATTTTAAGAAAGACTGCCCGGAA
AGTAAGAATTCAGATCAAATGGTCACAGTTGGTCGCTGGGCAAAGGGAATGAGTGCAGAC
TATGAAGAAATTTTGGATGTGCCTAAACCACAGAAACCCAAAACAAAGCTACCTAAAGTT
GTTAACTTTTGATAATGACTGGTACTGTTGTTAGCTGCCACTTCTTTGGTAAACATTCTG
AATTGGGCTTACTTCACAAATTGGAGCTAGACTCTCTCTTGGAGGCGGCTTGTATTATCG
ATATCAGTATAAACTGGGTGGGGTCAGGTTGTTCCCTGAGTTCTGTCCATTGAGGAGTAC
TTCTCCCACTGTTTGGGGAAAATCGCTGAAAAAAAGTATAAAATGTTCAAGTTGGATTCT
CTAAAAGTATATATTTTTAACAGATAAAACTTAGGTGTAACTAAGTGGTTATATACCTGA
TTGTAACAATCACCTTTTTCTTAAAAATTAAATTATGCATTAATATGAACCATCCCTAAA
TATAGGGTAACTGCTTTGTACTTGGAAATGAATTTTTGCCGACATAATTTTCTTCATTCA
AAGTATCAATTTATTATTATATTAGAATTTATAATTGCTATAAAATCTGTATTTTAAAAA
TATTTAATAAAAACGCGTTTGCTATTTATTTTTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57084761|ref|XP_536305.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57084761|ref|XP_536305.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               130-249, + strand, RNAz p=0.606734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-249, + strand, RNAz p=0.606734

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-1406, gnl|bosTau2|chr26 (6478920-6477576)
               

               
               11-1406, gnl|Hg17|chr5 (80636307-80644710)
               

               
               11-1406, gnl|Mm7|chr2 (54241198-54242668)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1406, gnl|bosTau2|chr26 (6478920-6477576)
               

               
               11-1406, gnl|Hg17|chr5 (80636307-80644710)
               

               
               11-1406, gnl|Mm7|chr2 (54241198-54242668)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               tes (0.415628)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	11-1406, gnl\|bosTau2\|chr26 (6478920-6477576)
	11-1406, gnl\|Hg17\|chr5 (80636307-80644710)
	11-1406, gnl\|Mm7\|chr2 (54241198-54242668)

	tes (0.415628)
	lin (0.291206)
	pla (0.267344)
	cbe (0.239234)
	pan (0.23596)
	col (0.195008)
	cmu (0.186393)
	fty (0.17584)
	sin (0.174948)
	mga (0.160205)
	bfe (0.149858)
	csk (0.140746)
	ste (0.135208)
	lyg (0.133103)
	eru (0.120048)
	eje (0.0988338)