Non-Coding RNA Search

Ss1.1-rplac_17687.5

Sequence:


               
               GAGGGCCCACTCCCTCACGGGCCCCCAAACAAAGGCGCAGTTCCTTGGGGTAACGACGTG
GGTCCATCATCATCCAGTAAGACGGCAAACAAGTTTGAGGGCCTGTCCCAGCAGTCGAGC
ACTGCTTCTGCAAAGACTGCCCTTGGCCCAAGAGTTCTTCCTAAACTACCTCAGAAAGTG
GCATTAAGGAAAACAGAAACCAGCCATCATCTCTCCCTCGACAAAGCCGGCGTCCCGCCC
GAAATCTTCCAGAAATCATCCCAGTGGGCAGAGTTACCCCTGAAGCCACCACCTGGAGAC
CTACCCCCGAAGCCCACGGAACTGGCTCCCAAACCCCAAATGGGAGACTTGCCACCTAAG
CCAGGAGAGCTGCCCCCCAAGCCGCAGCTGGGTGACCTGCCCCCCAAGCCACAGCTCTCA
GACTTGCCGCCCAAGCCGCAGATGAAGGACCTGCCGCCCAAGCCGCAGCTGGGAGACCTG
CTGGCCAAACCCCCGGCGGGAGACGCCTCGCCCAAGGCTCAGCCCCTGGAGCTCACCCCC
AAGTCACACCCGGCAGACCTGTCCCCAAACATCCAGAAGCAAGCGTCCGAAGACGCCAAT
GACCTGACGCCCACCCTGCCCGAGACACCTGTGCCGCTGCCCAGGAAGATCAACACGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGCCCACTCCCTCACGGGCCCCCAAACAAAGGCGCAGTTCCTTGGGGTAACGACGTG
GGTCCATCATCATCCAGTAAGACGGCAAACAAGTTTGAGGGCCTGTCCCAGCAGTCGAGC
ACTGCTTCTGCAAAGACTGCCCTTGGCCCAAGAGTTCTTCCTAAACTACCTCAGAAAGTG
GCATTAAGGAAAACAGAAACCAGCCATCATCTCTCCCTCGACAAAGCCGGCGTCCCGCCC
GAAATCTTCCAGAAATCATCCCAGTGGGCAGAGTTACCCCTGAAGCCACCACCTGGAGAC
CTACCCCCGAAGCCCACGGAACTGGCTCCCAAACCCCAAATGGGAGACTTGCCACCTAAG
CCAGGAGAGCTGCCCCCCAAGCCGCAGCTGGGTGACCTGCCCCCCAAGCCACAGCTCTCA
GACTTGCCGCCCAAGCCGCAGATGAAGGACCTGCCGCCCAAGCCGCAGCTGGGAGACCTG
CTGGCCAAACCCCCGGCGGGAGACGCCTCGCCCAAGGCTCAGCCCCTGGAGCTCACCCCC
AAGTCACACCCGGCAGACCTGTCCCCAAACATCCAGAAGCAAGCGTCCGAAGACGCCAAT
GACCTGACGCCCACCCTGCCCGAGACACCTGTGCCGCTGCCCAGGAAGATCAACACGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12805457|gb|AAH02201.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12805457|gb|AAH02201.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               177-658, gnl|bosTau2|chr14 (6111682-6112166)
               

               
               177-658, gnl|Hg17|chr8 (131142499-131142006)
               

               
               177-658, gnl|Mm7|chr15 (64170121-64169619)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-658, gnl|bosTau2|chr14 (6111682-6112166)
               

               
               177-658, gnl|Hg17|chr8 (131142499-131142006)
               

               
               177-658, gnl|Mm7|chr15 (64170121-64169619)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lnt (0.142308)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               pla (0.133672)

	177-658, gnl\|bosTau2\|chr14 (6111682-6112166)
	177-658, gnl\|Hg17\|chr8 (131142499-131142006)
	177-658, gnl\|Mm7\|chr15 (64170121-64169619)