Non-Coding RNA Search

Ss1.1-rplac_17738.5

Sequence:


               
               CTGGGGCATGGACATGGTCATCCTCGCCAGCTACAAGGAGCAGGGCATCCCACAGCAGCT
GTGAGCCTGCGGGGGCCGCCGAGAAGCCCGGGGCCCGGGAGGACCATGCCAGGCAGCGGT
CTTCACACGTTCTCTTCCGCTGCTTCCTGGGTTTGGAGGGGAAAGAAGGGATTTAAAAAT
ATTATTTATTTTCAAAACGCATCTGCTTTTCTCAGCAGGCTCTGAGGGCTGCTGGCTCCT
CCCCCTGCTCCAGAAAGCCCTGTAGCGCAGGCACCCGGAGCATCAGGGTGGAGTGGGGGT
GGGGAGAGGGTGGCGACGGCAATGCCCACGGAGAGGCCGCGGCGCCGGCCCCACCCACCT
TGCACACCCGCTGCCCACCTCCAGGGCGCCTGGGCTGCCTGGCCAGCTTGTCAAGGTGCA
GGATCGCGGTGAACACCTCTTCTGGTCCCCAGCCCCTGCCAGAGTGGTCTCCTGGGGCTG
CACCAGGGCGGAAGTGAGGATGGACAGACTCCAGCCCAGTGTGGACAGCTGCTGTGTCCT
TAGCTGTCAACGGGCGGGGCGGGGGGGGCAGATCCTCACAGGTGTCTCCTTATCGCTGCC
CCTACCTCCTTGCCAAGGCCTGGGGGTGTTCGATCTCTGTTTCTCTGGAAAGGAAGGAGA
GCAGTGGCTCCATTCCTGGGGTAAAACTGCCTGAACTGCCAGACGTTCATACACAAATTG
ACCATCCATATCTCAGTGGGCAGCCTTTCCCATTATACGCGACATTTCAGGTCCACGGTC
TTTTTTTTTTCCCCCCAAATCCTTAGGATCAGATGGGTCTCTCTGGATAAATTTGGGATT
TGAGAAGGAGAGTAAGAGACACTAAGGCACATTTCCTAACAGGTGGGCAGAGCCTGGAAC
AGTGCTCCCCCTTCAAACACGTGACCGTTTCTGCAGAGAATCATGAATCCATAAAACTGT
AAATAGCCCCACCTCTGTGCTGGGTGGGCTTTGCCACTAACTAAGTTTGGGAGGGAACTC
ACCTTTTAAGGACTTTGAGGGATTTTATAATTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGCATGGACATGGTCATCCTCGCCAGCTACAAGGAGCAGGGCATCCCACAGCAGCT
GTGAGCCTGCGGGGGCCGCCGAGAAGCCCGGGGCCCGGGAGGACCATGCCAGGCAGCGGT
CTTCACACGTTCTCTTCCGCTGCTTCCTGGGTTTGGAGGGGAAAGAAGGGATTTAAAAAT
ATTATTTATTTTCAAAACGCATCTGCTTTTCTCAGCAGGCTCTGAGGGCTGCTGGCTCCT
CCCCCTGCTCCAGAAAGCCCTGTAGCGCAGGCACCCGGAGCATCAGGGTGGAGTGGGGGT
GGGGAGAGGGTGGCGACGGCAATGCCCACGGAGAGGCCGCGGCGCCGGCCCCACCCACCT
TGCACACCCGCTGCCCACCTCCAGGGCGCCTGGGCTGCCTGGCCAGCTTGTCAAGGTGCA
GGATCGCGGTGAACACCTCTTCTGGTCCCCAGCCCCTGCCAGAGTGGTCTCCTGGGGCTG
CACCAGGGCGGAAGTGAGGATGGACAGACTCCAGCCCAGTGTGGACAGCTGCTGTGTCCT
TAGCTGTCAACGGGCGGGGCGGGGGGGGCAGATCCTCACAGGTGTCTCCTTATCGCTGCC
CCTACCTCCTTGCCAAGGCCTGGGGGTGTTCGATCTCTGTTTCTCTGGAAAGGAAGGAGA
GCAGTGGCTCCATTCCTGGGGTAAAACTGCCTGAACTGCCAGACGTTCATACACAAATTG
ACCATCCATATCTCAGTGGGCAGCCTTTCCCATTATACGCGACATTTCAGGTCCACGGTC
TTTTTTTTTTCCCCCCAAATCCTTAGGATCAGATGGGTCTCTCTGGATAAATTTGGGATT
TGAGAAGGAGAGTAAGAGACACTAAGGCACATTTCCTAACAGGTGGGCAGAGCCTGGAAC
AGTGCTCCCCCTTCAAACACGTGACCGTTTCTGCAGAGAATCATGAATCCATAAAACTGT
AAATAGCCCCACCTCTGTGCTGGGTGGGCTTTGCCACTAACTAAGTTTGGGAGGGAACTC
ACCTTTTAAGGACTTTGAGGGATTTTATAATTGCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               22-123, - strand, RNAz p=0.558616
               

               
               164-316, + strand, RNAz p=0.985417

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               22-123, - strand, RNAz p=0.558616
               

               
               164-316, + strand, RNAz p=0.985417

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-406, gnl|bosTau2|chr16 (17885109-17885508)
               

               
               22-406, gnl|Hg17|chr1 (223096434-223096829)
               

               
               22-406, gnl|Mm7|chr1 (180418446-180418079)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-406, gnl|bosTau2|chr16 (17885109-17885508)
               

               
               22-406, gnl|Hg17|chr1 (223096434-223096829)
               

               
               22-406, gnl|Mm7|chr1 (180418446-180418079)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	22-123, - strand, RNAz p=0.558616
	164-316, + strand, RNAz p=0.985417

	22-406, gnl\|bosTau2\|chr16 (17885109-17885508)
	22-406, gnl\|Hg17\|chr1 (223096434-223096829)
	22-406, gnl\|Mm7\|chr1 (180418446-180418079)