Non-Coding RNA Search

Ss1.1-rplac_17759.5

Sequence:


               
               GTTTGCCTAAGCATAGTATAATTATTAAGCAAGTTTGACTACTTAGTTTTATCAATACTC
CGAGCCTATGGCTAATACGTTTATATGATTGATTGATTGATGGTAAATCCTAAAAGCTGA
ACTCTGATATTAATAAATAGAAGGTAAAGTGAAACAATGTATATTTACAGAACACTGTTT
TCATGAAATGCAAATTTTTCAAACTCACATTAACTGGGAAGCAGCCAATCCTCTGTAGAG
AAATCCCAGGTTGAAGTCTGGATTGAAACTTTGAAGACGAGGAGGTGATATCCGGCCTAC
AGTTTCAGAGGACTACACTTTTGAATACTGCGTGGTATTTGGCATAAATCTGAGACTGGC
ACCAGACAAATTTTGGGCATGGGTTTTCTCCCTGCAATAATTCACTTCTCAGAGTAATTC
GGAAGACAAAAACAGAAAAATTATAATGACCTTTCAGTATGTTAGAATTTATCATATGTT
AGAATGTTAACATACTCTCTGCAGAATAAATTTCAACTAATGCAGCTGGACTTAACATAG
AGCCTATGAAACACTGTGAATGAAGCCTGAAGCGTTGCTGGTTTTATCCTGCATGAAAAA
TAAAGAATATATAAATTCATTTGAGTGGAGATGTTATAAAAATAAAACCTCATCTATAAT
TTCTTTTAGAACAAATGTGCTAAAACCCTGTCTTAGTGCCAGTATGAGGTTTGTTGATAT
TTTAAGGGGCTAAATACTTGAAGATTTTCTAATATTTTCAATTTTCATAAAGGTAGGAGA
AATATTCCCACCCCAACCTATGCTTGCAAGCTCCTGAGACTATTCATTTCTGTAATTCCT
GTAGTGTAGTGATCTGTACATGTTTAATAAATGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGCCTAAGCATAGTATAATTATTAAGCAAGTTTGACTACTTAGTTTTATCAATACTC
CGAGCCTATGGCTAATACGTTTATATGATTGATTGATTGATGGTAAATCCTAAAAGCTGA
ACTCTGATATTAATAAATAGAAGGTAAAGTGAAACAATGTATATTTACAGAACACTGTTT
TCATGAAATGCAAATTTTTCAAACTCACATTAACTGGGAAGCAGCCAATCCTCTGTAGAG
AAATCCCAGGTTGAAGTCTGGATTGAAACTTTGAAGACGAGGAGGTGATATCCGGCCTAC
AGTTTCAGAGGACTACACTTTTGAATACTGCGTGGTATTTGGCATAAATCTGAGACTGGC
ACCAGACAAATTTTGGGCATGGGTTTTCTCCCTGCAATAATTCACTTCTCAGAGTAATTC
GGAAGACAAAAACAGAAAAATTATAATGACCTTTCAGTATGTTAGAATTTATCATATGTT
AGAATGTTAACATACTCTCTGCAGAATAAATTTCAACTAATGCAGCTGGACTTAACATAG
AGCCTATGAAACACTGTGAATGAAGCCTGAAGCGTTGCTGGTTTTATCCTGCATGAAAAA
TAAAGAATATATAAATTCATTTGAGTGGAGATGTTATAAAAATAAAACCTCATCTATAAT
TTCTTTTAGAACAAATGTGCTAAAACCCTGTCTTAGTGCCAGTATGAGGTTTGTTGATAT
TTTAAGGGGCTAAATACTTGAAGATTTTCTAATATTTTCAATTTTCATAAAGGTAGGAGA
AATATTCCCACCCCAACCTATGCTTGCAAGCTCCTGAGACTATTCATTTCTGTAATTCCT
GTAGTGTAGTGATCTGTACATGTTTAATAAATGCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               725-836, - strand, RNAz p=0.518091

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               725-836, - strand, RNAz p=0.518091

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-876, gnl|bosTau2|chr14 (44499850-44498987)
               

               
               2-876, gnl|canFam2|chr29 (40903158-40903824)
               

               
               2-876, gnl|dasNov1|scaffold_8530 (10494-9822)
               

               
               2-876, gnl|echTel1|scaffold_314609 (52001-51322)
               

               
               2-876, gnl|hg17|chr8 (93965029-93965733)
               

               
               2-876, gnl|Hg17|chr8 (93965955-93965051)
               

               
               2-876, gnl|loxAfr1|scaffold_76896 (7410-8115)
               

               
               2-876, gnl|mm7|chr4 (12910621-12909969)
               

               
               2-876, gnl|Mm7|chr4 (12909760-12910597)
               

               
               2-876, gnl|oryCun1|scaffold_145384 (14134-14821)
               

               
               2-876, gnl|panTro1|chr7 (96169379-96170082)
               

               
               2-876, gnl|rheMac2|chr8 (95481751-95482451)
               

               
               2-876, gnl|rn3|chr5 (27293493-27292840)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-876, gnl|bosTau2|chr14 (44499850-44498987)
               

               
               2-876, gnl|canFam2|chr29 (40903158-40903824)
               

               
               2-876, gnl|dasNov1|scaffold_8530 (10494-9822)
               

               
               2-876, gnl|echTel1|scaffold_314609 (52001-51322)
               

               
               2-876, gnl|hg17|chr8 (93965029-93965733)
               

               
               2-876, gnl|Hg17|chr8 (93965955-93965051)
               

               
               2-876, gnl|loxAfr1|scaffold_76896 (7410-8115)
               

               
               2-876, gnl|mm7|chr4 (12910621-12909969)
               

               
               2-876, gnl|Mm7|chr4 (12909760-12910597)
               

               
               2-876, gnl|oryCun1|scaffold_145384 (14134-14821)
               

               
               2-876, gnl|panTro1|chr7 (96169379-96170082)
               

               
               2-876, gnl|rheMac2|chr8 (95481751-95482451)
               

               
               2-876, gnl|rn3|chr5 (27293493-27292840)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               rec (0.17307)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	2-876, gnl\|bosTau2\|chr14 (44499850-44498987)
	2-876, gnl\|canFam2\|chr29 (40903158-40903824)
	2-876, gnl\|dasNov1\|scaffold_8530 (10494-9822)
	2-876, gnl\|echTel1\|scaffold_314609 (52001-51322)
	2-876, gnl\|hg17\|chr8 (93965029-93965733)
	2-876, gnl\|Hg17\|chr8 (93965955-93965051)
	2-876, gnl\|loxAfr1\|scaffold_76896 (7410-8115)
	2-876, gnl\|mm7\|chr4 (12910621-12909969)
	2-876, gnl\|Mm7\|chr4 (12909760-12910597)
	2-876, gnl\|oryCun1\|scaffold_145384 (14134-14821)
	2-876, gnl\|panTro1\|chr7 (96169379-96170082)
	2-876, gnl\|rheMac2\|chr8 (95481751-95482451)
	2-876, gnl\|rn3\|chr5 (27293493-27292840)

	rec (0.17307)
	csk (0.140746)
	pla (0.133672)
	lyg (0.133103)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)