Ss1.1-rplac_17994.5
|
CCGGTTGGTGCCAGAAGTTTTAATTGGTATTTTCCTCGTTTGTCAGGATTAAATGTTAAG
TATCACCTGGTTTGAGTACAGCTCTGAGAATCCTGCTGATACGGGCTAGGTCAGGGAATC
AGCTCTAGAGCCTAGCTGCTGCCCCTTCGTTTACGCATCCTCCAAACAAATTTTAAATTG
AAATTGTCATTTTCCGGAGGCCTCTCCCTGGCGGGATCCAGCGGAGAAACAGAACCAGAG
AGGAAATGTGTGGGTATGAGAGGAGTTTTCTTTTTCAATTTTGACTAATAGTGTGTGGAG
TGAGCTTCTTTGATCGAAGGAGAGCAGAGTTAAAGGGTCCGGGGTCCGAGCATCTTCAGA
TCGGAGATCAAAGCCAGCGCGAAGGTGATCAGGAATGGGATTGGAAGGTGAAATAGAATT
GTGCCAGATGAGTTACCCCAGACGGGCCCGCGGCAACTCGGTGTCCGCTTGGCTTTCAGA
CTGAATAATCTAGCCAGCTGGCAGCCATGAATGAATGGATGAAGAAAGGCCCCTTAGAAT
GGCAAGATTACACTTACAAAGAAGTCAGAGTGACAGCCAGTGAGAAGGAGTATAAAGGAT
GGGTTTTAACCACAGACCCAGTCTCTGCCAATATTGTCCTCGTGAACTTCCTTGAAGATG
GCAGCATGTCTGTGACCGGAATCATGGGACATGGTGTGCAGACTGTTGAAATTGTGAATG
AAGGGGACCATAACGTGAGAGAGAAACTGATGCATTTGTTCATGTCTGGAGACTGCAAGG
CATACAGCCCGGAGGATCTGGAAGAGAGAAAGAACAGCCTGAAGAAATGGCTGGAGAAGA
ACCACATCCCCATCACTGAACAGGGAGATTCACGAAGGACTCTCTGTGTGGCTGGGGTCT
TGACTATAGACCCCCCATATGGTCCAGAAAATTGCAGTAGTTCTAATGAGATTATTTTGT
CCCGTGTTCAGGATCTTATTCAAGGACATCTTGCAGCTTCCCACTGAAAGGCTGAGAACT
GTAGGTGCACTGACTGAAATAAGACTTCCTCTTTTGGAAAGTCTTTGTTGTTTCTGCTGA
AATAAAAGATATGGATCATGAGTGCTAATAAGTAAACCGGGCAGGATGGCACCTCAAACA
AAACTATAACAGGGACATCAGAATTACGAGTCTTTTCTTGTGATGGGGATACACCTCCAT
TTTTGTTAGACAAGAAATGTATTCGGAAAAGATGGAACATGTTAAATTTGTTATAAAATT
CAAAGTTAAAAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGGTTGGTGCCAGAAGTTTTAATTGGTATTTTCCTCGTTTGTCAGGATTAAATGTTAAG
TATCACCTGGTTTGAGTACAGCTCTGAGAATCCTGCTGATACGGGCTAGGTCAGGGAATC
AGCTCTAGAGCCTAGCTGCTGCCCCTTCGTTTACGCATCCTCCAAACAAATTTTAAATTG
AAATTGTCATTTTCCGGAGGCCTCTCCCTGGCGGGATCCAGCGGAGAAACAGAACCAGAG
AGGAAATGTGTGGGTATGAGAGGAGTTTTCTTTTTCAATTTTGACTAATAGTGTGTGGAG
TGAGCTTCTTTGATCGAAGGAGAGCAGAGTTAAAGGGTCCGGGGTCCGAGCATCTTCAGA
TCGGAGATCAAAGCCAGCGCGAAGGTGATCAGGAATGGGATTGGAAGGTGAAATAGAATT
GTGCCAGATGAGTTACCCCAGACGGGCCCGCGGCAACTCGGTGTCCGCTTGGCTTTCAGA
CTGAATAATCTAGCCAGCTGGCAGCCATGAATGAATGGATGAAGAAAGGCCCCTTAGAAT
GGCAAGATTACACTTACAAAGAAGTCAGAGTGACAGCCAGTGAGAAGGAGTATAAAGGAT
GGGTTTTAACCACAGACCCAGTCTCTGCCAATATTGTCCTCGTGAACTTCCTTGAAGATG
GCAGCATGTCTGTGACCGGAATCATGGGACATGGTGTGCAGACTGTTGAAATTGTGAATG
AAGGGGACCATAACGTGAGAGAGAAACTGATGCATTTGTTCATGTCTGGAGACTGCAAGG
CATACAGCCCGGAGGATCTGGAAGAGAGAAAGAACAGCCTGAAGAAATGGCTGGAGAAGA
ACCACATCCCCATCACTGAACAGGGAGATTCACGAAGGACTCTCTGTGTGGCTGGGGTCT
TGACTATAGACCCCCCATATGGTCCAGAAAATTGCAGTAGTTCTAATGAGATTATTTTGT
CCCGTGTTCAGGATCTTATTCAAGGACATCTTGCAGCTTCCCACTGAAAGGCTGAGAACT
GTAGGTGCACTGACTGAAATAAGACTTCCTCTTTTGGAAAGTCTTTGTTGTTTCTGCTGA
AATAAAAGATATGGATCATGAGTGCTAATAAGTAAACCGGGCAGGATGGCACCTCAAACA
AAACTATAACAGGGACATCAGAATTACGAGTCTTTTCTTGTGATGGGGATACACCTCCAT
TTTTGTTAGACAAGAAATGTATTCGGAAAAGATGGAACATGTTAAATTTGTTATAAAATT
CAAAGTTAAAAT
|
|
gi|55595539|ref|XP_515422.1| |
Protein identifier
|
gi|55595539|ref|XP_515422.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
135-487, gnl|bosTau2|chr11 (15973846-15973513) |
|
135-487, gnl|Hg17|chr2 (38917187-38917520) |
| |
|
488-631, gnl|bosTau2|chr11 (15973379-15973236) |
|
488-631, gnl|canFam2|chr17 (33945760-33945901) |
|
488-631, gnl|dasNov1|scaffold_294973 (630-475) |
|
488-631, gnl|echTel1|scaffold_310270 (36818-36974) |
|
488-631, gnl|galGal2|chrUn (139346171-139346033) |
|
488-631, gnl|hg17|chr2 (38917758-38917914) |
|
488-631, gnl|Hg17|chr2 (38917765-38917911) |
|
488-631, gnl|loxAfr1|scaffold_88624 (3888-3733) |
|
488-631, gnl|mm7|chr17 (78521327-78521480) |
|
488-631, gnl|Mm7|chr17 (78521334-78521477) |
|
488-631, gnl|monDom2|scaffold_23 (42021298-42021453) |
|
488-631, gnl|oryCun1|scaffold_173308 (54367-54211) |
|
488-631, gnl|panTro1|chr12 (40409995-40410151) |
|
488-631, gnl|rheMac2|chr13 (38764747-38764903) |
|
488-631, gnl|rn3|chr6 (3126628-3126781) |
|
488-631, gnl|xenTro1|scaffold_41 (554712-554869) |
| |
|
632-1272, gnl|bosTau2|chr11 (15970805-15970160) |
|
632-1272, gnl|Hg17|chr2 (38920310-38921247) |
|
632-1272, gnl|Mm7|chr17 (78523451-78524187) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
135-487, gnl|bosTau2|chr11 (15973846-15973513) |
|
135-487, gnl|Hg17|chr2 (38917187-38917520) |
| |
|
488-631, gnl|bosTau2|chr11 (15973379-15973236) |
|
488-631, gnl|canFam2|chr17 (33945760-33945901) |
|
488-631, gnl|dasNov1|scaffold_294973 (630-475) |
|
488-631, gnl|echTel1|scaffold_310270 (36818-36974) |
|
488-631, gnl|galGal2|chrUn (139346171-139346033) |
|
488-631, gnl|hg17|chr2 (38917758-38917914) |
|
488-631, gnl|Hg17|chr2 (38917765-38917911) |
|
488-631, gnl|loxAfr1|scaffold_88624 (3888-3733) |
|
488-631, gnl|mm7|chr17 (78521327-78521480) |
|
488-631, gnl|Mm7|chr17 (78521334-78521477) |
|
488-631, gnl|monDom2|scaffold_23 (42021298-42021453) |
|
488-631, gnl|oryCun1|scaffold_173308 (54367-54211) |
|
488-631, gnl|panTro1|chr12 (40409995-40410151) |
|
488-631, gnl|rheMac2|chr13 (38764747-38764903) |
|
488-631, gnl|rn3|chr6 (3126628-3126781) |
|
488-631, gnl|xenTro1|scaffold_41 (554712-554869) |
| |
|
632-1272, gnl|bosTau2|chr11 (15970805-15970160) |
|
632-1272, gnl|Hg17|chr2 (38920310-38921247) |
|
632-1272, gnl|Mm7|chr17 (78523451-78524187) |
|
pla (0.267344) |
|
tes (0.207814) |
|
spl (0.143184) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
pla (0.267344) |
|
tes (0.207814) |
|
spl (0.143184) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
eje (0.0988338) |
